Os05g0256500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os05g0256500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.14 | 0.453 | 8.97 | -2.53 | 0.942 | 1.18 | 0.0592 | -1.3 | 0.537 | 22.6 | 21.6 | 1122 | -- | -- |
| 97.35 | 0.46 | 8.94 | -2.17 | 0.959 | 1.25 | -0.00765 | -- | 0.613 | 22.4 | 21.5 | 1131 | -- | -- |
| 93.14 | 0.449 | 8.97 | -2.52 | 0.938 | 1.18 | -- | -1.29 | 0.539 | 22.6 | 21.59 | 1112 | -- | -- |
| 97.26 | 0.459 | 8.93 | -2.17 | 0.937 | 1.25 | -- | -- | 0.617 | 22.6 | 21.6 | 1112 | -- | -- |
| 138.55 | 0.548 | 8.95 | -2.45 | -- | 1.32 | -- | -1.08 | 0.519 | -- | 21.9 | 818 | -- | -- |
| 148.29 | 0.571 | 8.85 | -1.68 | 1.08 | -- | -0.251 | -- | 0.984 | 22.8 | -- | -- | -- | -- |
| 148.55 | 0.571 | 8.85 | -1.67 | 1.08 | -- | -- | -- | 0.984 | 22.8 | -- | -- | -- | -- |
| 142.35 | 0.556 | 8.92 | -2.21 | -- | 1.45 | -- | -- | 0.568 | -- | 21.58 | 871 | -- | -- |
| 206.12 | 0.669 | 8.85 | -- | 1.13 | 0.705 | -- | -- | 0.978 | 22.3 | 22.4 | 1243 | -- | -- |
| 220.42 | 0.694 | 8.82 | -1.65 | -- | -- | -- | -- | 0.991 | -- | -- | -- | -- | -- |
| 222.3 | 0.697 | 8.81 | -- | 1.07 | -- | -- | -- | 1.17 | 22.7 | -- | -- | -- | -- |
| 252.6 | 0.74 | 8.84 | -- | -- | 0.923 | -- | -- | 0.907 | -- | 22.1 | 798 | -- | -- |
| 292.32 | 0.798 | 8.78 | -- | -- | -- | -- | -- | 1.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 20 |
| 6 | 97.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 11 |
| 33 | 97.67 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 46 | 97.83 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 71 | 98.07 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 95 | 98.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 109 | 98.31 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 147 | 98.56 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 160 | 98.66 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 7 |
| 229 | 99.08 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 235 | 99.15 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 23 |
| 732 | 102.11 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 799 | 102.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 805 | 102.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 16 |
| 809 | 102.60 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 827 | 102.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 16 |
| 831 | 102.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 834 | 102.71 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 847 | 102.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 14 |
| 854 | 102.80 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |