Os05g0256100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Serine/threonine protein kinase domain containing protein.
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Os05g0256100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Serine/threonine protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.87 | 0.448 | 11.3 | -1.46 | 1.16 | -1.99 | 0.403 | -2.57 | 0.181 | 6.16 | 0.975 | 1423 | -- | -- |
| 94.32 | 0.452 | 11.3 | -1.73 | 1.18 | -1.59 | 0.436 | -- | 0.145 | 5.49 | 0.9829 | 1467 | -- | -- |
| 91.1 | 0.445 | 11.3 | -1.44 | 1.16 | -2.07 | -- | -2.85 | 0.186 | 6.22 | 0.8404 | 1420 | -- | -- |
| 94.5 | 0.453 | 11.3 | -1.69 | 1.19 | -1.58 | -- | -- | 0.141 | 5.28 | 1.548 | 1482 | -- | -- |
| 159.89 | 0.589 | 11.3 | -1.37 | -- | -2.3 | -- | -3.48 | 0.209 | -- | 0.7769 | 1443 | -- | -- |
| 119.67 | 0.513 | 11.3 | -1.38 | 1.17 | -- | 0.491 | -- | 0.334 | 5.82 | -- | -- | -- | -- |
| 120.25 | 0.514 | 11.3 | -1.37 | 1.17 | -- | -- | -- | 0.332 | 5.85 | -- | -- | -- | -- |
| 163.66 | 0.596 | 11.3 | -1.66 | -- | -1.54 | -- | -- | 0.138 | -- | 2.184 | 1446 | -- | -- |
| 160.07 | 0.589 | 11.2 | -- | 1.82 | -1.36 | -- | -- | 0.368 | 6.63 | 2.88 | 2388 | -- | -- |
| 191.81 | 0.647 | 11.3 | -1.34 | -- | -- | -- | -- | 0.36 | -- | -- | -- | -- | -- |
| 169.98 | 0.61 | 11.2 | -- | 1.15 | -- | -- | -- | 0.485 | 5.91 | -- | -- | -- | -- |
| 217.29 | 0.687 | 11.3 | -- | -- | -0.969 | -- | -- | 0.239 | -- | 9.276 | 7220 | -- | -- |
| 239.02 | 0.722 | 11.2 | -- | -- | -- | -- | -- | 0.508 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.32 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 2 | 88.42 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 12 | 89.38 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 13 | 89.39 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 17 | 89.53 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 19 | 89.54 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 23 | 89.84 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 27 | 90.17 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 12 | NA |
| 30 | 90.21 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 32 | 90.25 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 21 |
| 35 | 90.30 | radiation | 30.0 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 72 | 90.65 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 15 | 6 |
| 92 | 90.75 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 15 | 6 |
| 96 | 90.77 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 105 | 90.84 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 106 | 90.84 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 111 | 90.85 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 23 | 21 |
| 112 | 90.85 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 120 | 90.88 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 2 | 18 |
| 167 | 90.99 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 168 | 91.00 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 175 | 91.00 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 180 | 91.01 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 4 | 21 |
| 193 | 91.03 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 222 | 91.09 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 232 | 91.11 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 281 | 91.19 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 17 | NA |
| 309 | 91.23 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 2 | 2 |
| 328 | 91.25 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 7 |
| 367 | 91.29 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 386 | 91.31 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 414 | 91.34 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 487 | 91.40 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 498 | 91.41 | wind | 3.0 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 643 | 91.54 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 674 | 91.57 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 14 | NA |
| 698 | 91.59 | temperature | 25.0 | 14400 | < th | dose independent | sin | 18 | NA |
| 734 | 91.62 | wind | 3.0 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 735 | 91.62 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 7 | 5 |
| 747 | 91.63 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 7 | 5 |
| 761 | 91.64 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 7 | 2 |
| 780 | 91.66 | temperature | 25.0 | 14400 | > th | dose independent | sin | 18 | NA |
| 891 | 91.74 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 972 | 91.79 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 984 | 91.80 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 987 | 91.80 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 1000 | 91.81 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |