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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0255800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.07 (0.0431) R2 : 0.641
β1 : 1.95 (0.158) R2dD : 0.133 R2D : 0.0882
β2 : 2.45 (0.109) R2dC : 0.425 R2C : 0.246
β3 : -2.3 (0.133) R2dE : 0.248 R2E : 0.0507
β4 : 2.65 (0.428) R2dD*C : 0.0279 R2D*C : 0.0247
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.513 (0.0924) R2dN8 : 0.0321 R2N8 : -0.0143
σ : 0.805
deviance : 298.55
__
_____
C
peak time of C : 14.5
E
wheather : temperature
threshold : 11.76
memory length : 261
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.9
open length of G : 7.73

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
291.88 0.803 4.08 1.88 2.43 -2.35 3.01 -2.29 0.466 14.3 8.611 263 2.83 7.7
298.55 0.805 4.07 1.95 2.45 -2.3 2.65 -- 0.513 14.5 11.76 261 2.9 7.73
319.97 0.833 4.07 2.04 2.41 -2.28 -- -0.868 0.504 14.3 8.98 263 2.75 7.83
320.12 0.833 4.07 2.09 2.45 -2.33 -- -- 0.515 14.3 8.855 278 2.68 7.9
473.5 1.02 4.08 1.74 -- -1.77 -- -2.7 0.479 -- -18.61 1605 1.75 7.97
335.38 0.859 4.15 1.91 2.67 -- 3.3 -- 0.368 17 -- -- -- --
363.17 0.892 4.14 1.92 2.69 -- -- -- 0.384 17 -- -- -- --
455.42 0.994 3.98 2.33 -- -2.39 -- -- 0.83 -- -48.95 1732 0.0167 7.79
427.17 0.963 4.12 -- 2.5 -2.34 -- -- 0.226 13.9 -2.91 299 2.65 7.76
743.48 1.27 4.11 1.82 -- -- -- -- 0.315 -- -- -- -- --
460.42 1 4.19 -- 2.66 -- -- -- 0.17 17 -- -- -- --
563.92 1.11 4.16 -- -- -2.1 -- -- 0.214 -- -125.8 1726 0.0155 8.15
831.17 1.35 4.16 -- -- -- -- -- 0.113 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 294.74 temperature 10.0 270 > th dose dependent rect. 3 7
7 299.45 humidity 60.0 270 > th dose independent rect. 3 8
8 299.60 atmosphere 1015.0 270 < th dose independent rect. 15 7
10 299.88 radiation 30.0 270 < th dose independent rect. 3 19
12 299.95 wind 7.0 270 < th dose independent rect. 22 17
17 300.66 wind 9.0 270 < th dose independent rect. 15 7
18 300.68 radiation 30.0 270 < th dose independent rect. 4 17
22 301.15 radiation 40.0 270 < th dose independent rect. 15 7
23 301.33 temperature 10.0 270 > th dose independent rect. 15 7
24 301.33 temperature 10.0 270 > th dose independent rect. 22 17
27 301.60 precipitation 0.1 270 < th dose independent rect. 11 16
28 301.60 precipitation 0.1 270 < th dose dependent rect. 11 16
31 301.75 precipitation 0.1 270 < th dose independent rect. 22 17
32 301.75 precipitation 0.1 270 < th dose dependent rect. 22 17
37 301.98 temperature 15.0 270 > th dose independent rect. 3 8
41 302.19 radiation 30.0 270 < th dose independent rect. 13 9
44 302.23 atmosphere 995.0 270 > th dose independent rect. 22 17
45 302.24 atmosphere 1015.0 270 < th dose independent rect. 4 17
47 302.34 radiation 40.0 270 < th dose dependent rect. 4 17
49 302.49 temperature 10.0 270 > th dose dependent rect. 4 18
54 302.63 atmosphere 995.0 270 > th dose independent rect. 15 7
57 302.68 radiation 40.0 270 < th dose dependent rect. 3 19
64 302.91 temperature 30.0 90 < th dose independent rect. 23 18
67 303.06 temperature 15.0 270 > th dose independent rect. 4 17
69 303.22 atmosphere 995.0 270 > th dose independent rect. 3 8
70 303.22 atmosphere 1015.0 270 < th dose independent rect. 3 8
71 303.22 temperature 10.0 270 > th dose independent rect. 11 16
72 303.24 temperature 25.0 10 > th dose dependent rect. 18 18
75 303.27 wind 7.0 270 < th dose independent rect. 9 7
77 303.41 radiation 20.0 270 > th dose independent rect. 11 3
78 303.42 wind 9.0 270 < th dose independent rect. 3 8
82 303.46 radiation 40.0 270 < th dose independent rect. 16 17
85 303.54 wind 9.0 270 < th dose independent rect. 11 16
86 303.55 temperature 10.0 270 > th dose dependent rect. 17 16
90 303.66 wind 7.0 270 < th dose independent rect. 16 17
94 303.77 temperature 10.0 90 > th dose dependent rect. 6 17
95 303.81 wind 9.0 270 < th dose independent rect. 21 7
96 303.82 temperature 10.0 270 > th dose independent rect. 21 7
97 303.82 temperature 30.0 270 < th dose independent rect. 21 7
98 303.82 humidity 50.0 270 > th dose independent rect. 21 7
101 303.82 atmosphere 995.0 270 > th dose independent rect. 21 7
102 303.82 radiation 1.0 270 < th dose independent rect. 21 7
108 303.82 radiation 10.0 270 < th dose dependent rect. 21 7
117 303.98 precipitation 0.1 270 < th dose independent rect. 3 8
118 303.98 precipitation 0.1 270 < th dose dependent rect. 3 8
121 304.07 atmosphere 1015.0 90 < th dose independent rect. 17 6
122 304.07 wind 9.0 270 < th dose independent rect. 4 17
124 304.09 wind 1.0 270 > th dose independent rect. 15 7
135 304.15 radiation 1.0 270 > th dose independent rect. 9 7
139 304.20 atmosphere 1015.0 270 < th dose independent rect. 3 19
140 304.21 precipitation 0.1 270 < th dose independent rect. 9 7
142 304.21 precipitation 0.1 270 < th dose dependent rect. 9 7
145 304.32 temperature 10.0 270 > th dose independent rect. 9 7
146 304.32 atmosphere 1015.0 270 < th dose independent rect. 9 7
147 304.32 temperature 10.0 270 > th dose independent rect. 16 17
151 304.37 temperature 25.0 10 > th dose dependent rect. 20 16
156 304.53 precipitation 0.1 270 < th dose independent rect. 21 7
157 304.53 precipitation 0.1 270 < th dose dependent rect. 21 7
159 304.58 wind 1.0 90 > th dose independent rect. 17 6
160 304.58 atmosphere 995.0 270 > th dose independent rect. 16 17
161 304.58 radiation 40.0 270 < th dose dependent rect. 15 6
162 304.59 atmosphere 995.0 90 > th dose independent rect. 17 6
173 304.70 radiation 40.0 270 < th dose dependent rect. 14 8
174 304.71 atmosphere 1015.0 270 < th dose independent rect. 16 17
178 304.74 temperature 10.0 270 > th dose dependent rect. 16 18
185 304.84 wind 9.0 90 < th dose independent rect. 17 6
205 305.19 temperature 10.0 90 > th dose independent rect. 17 6
206 305.19 radiation 20.0 90 < th dose independent rect. 17 6
212 305.21 radiation 40.0 90 < th dose dependent rect. 17 6
215 305.23 radiation 1.0 90 < th dose independent rect. 23 7
222 305.31 radiation 40.0 270 < th dose dependent rect. 16 17
233 305.40 temperature 10.0 270 > th dose dependent rect. 15 20
241 305.49 radiation 40.0 270 < th dose independent rect. 3 7
246 305.57 atmosphere 995.0 270 > th dose independent rect. 4 17
258 305.70 atmosphere 1000.0 270 > th dose independent rect. 22 5
269 305.73 temperature 10.0 10 > th dose dependent rect. 6 17
272 305.76 precipitation 0.1 270 < th dose independent rect. 15 7
273 305.76 precipitation 0.1 270 < th dose dependent rect. 15 7
280 305.79 radiation 1.0 90 < th dose dependent rect. 23 7
295 305.92 atmosphere 995.0 270 > th dose dependent rect. 22 5
301 305.96 radiation 1.0 270 > th dose dependent rect. 11 4
308 306.05 humidity 90.0 270 < th dose independent rect. 9 7
309 306.05 temperature 25.0 10 > th dose dependent rect. 2 10
326 306.15 temperature 25.0 10 > th dose dependent sin 8 NA
345 306.35 humidity 50.0 90 > th dose independent rect. 17 6
354 306.40 wind 7.0 270 < th dose independent rect. 22 5
382 306.44 radiation 20.0 90 < th dose dependent rect. 11 12
400 306.53 temperature 30.0 270 < th dose independent rect. 22 5
401 306.53 humidity 50.0 270 > th dose independent rect. 22 5
405 306.53 radiation 1.0 270 < th dose independent rect. 22 5
412 306.53 radiation 1.0 270 < th dose dependent rect. 22 5
417 306.53 radiation 1.0 90 < th dose dependent rect. 23 13
443 306.60 temperature 10.0 270 > th dose independent rect. 8 9
444 306.60 atmosphere 1015.0 270 < th dose independent rect. 8 9
445 306.60 temperature 10.0 270 > th dose independent rect. 17 15
454 306.62 wind 9.0 270 < th dose dependent rect. 15 6
475 306.72 radiation 1.0 270 < th dose dependent rect. 21 14
482 306.76 humidity 50.0 270 > th dose dependent rect. 21 6
492 306.85 precipitation 0.1 270 < th dose independent rect. 22 5
493 306.85 precipitation 0.1 270 < th dose dependent rect. 22 5
511 306.91 wind 9.0 270 < th dose dependent rect. 22 5
516 306.93 radiation 1.0 90 < th dose dependent rect. 23 17
527 306.98 temperature 25.0 90 > th dose dependent sin 9 NA
532 307.01 atmosphere 995.0 270 > th dose independent rect. 9 7
561 307.20 wind 9.0 270 < th dose dependent rect. 21 7
571 307.26 humidity 50.0 90 > th dose independent rect. 17 18
608 307.55 humidity 90.0 270 < th dose independent rect. 11 4
656 307.70 radiation 1.0 90 < th dose independent rect. 23 13
660 307.72 humidity 50.0 270 > th dose independent rect. 17 15
663 307.73 radiation 1.0 90 > th dose independent rect. 11 6
683 307.85 precipitation 0.1 90 < th dose independent rect. 11 6
685 307.85 precipitation 0.1 90 < th dose dependent rect. 11 6
714 307.97 atmosphere 1015.0 270 < th dose independent rect. 22 17
716 307.98 wind 1.0 43200 > th dose dependent rect. 23 1
722 308.01 radiation 1.0 270 < th dose independent rect. 21 14
724 308.02 temperature 10.0 90 > th dose independent rect. 11 6
725 308.02 atmosphere 1015.0 90 < th dose independent rect. 11 6
731 308.04 precipitation 0.1 270 < th dose independent rect. 4 17
736 308.04 precipitation 0.1 270 < th dose dependent rect. 4 17
754 308.14 radiation 1.0 270 < th dose dependent rect. 21 10
757 308.15 radiation 1.0 90 < th dose independent rect. 23 17
821 308.42 atmosphere 995.0 270 > th dose dependent rect. 21 7
853 308.57 wind 9.0 43200 < th dose dependent rect. 23 1
896 308.68 wind 1.0 270 > th dose independent rect. 9 7
910 308.72 atmosphere 1010.0 10 < th dose independent rect. 17 7
916 308.75 wind 9.0 90 < th dose dependent rect. 11 6
923 308.78 temperature 25.0 10 > th dose independent rect. 18 18
935 308.85 temperature 25.0 270 > th dose independent rect. 3 7
940 308.86 wind 1.0 90 > th dose independent rect. 6 17
951 308.90 precipitation 0.1 270 < th dose independent rect. 16 17
954 308.90 precipitation 0.1 270 < th dose dependent rect. 16 17
981 308.94 temperature 30.0 90 < th dose dependent rect. 23 6