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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0253200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.4 (0.0551) R2 : 0.66
β1 : 2.39 (0.213) R2dD : 0.144 R2D : -0.129
β2 : 1.22 (0.117) R2dC : 0.0831 R2C : -0.205
β3 : -4.54 (0.393) R2dE : 0.25 R2E : -0.149
β4 : 3.52 (0.453) R2dD*C : 0.0458 R2D*C : -0.248
β5 : -16.4 (1.08) R2dD*E : 0.387 R2D*E : -0.432
γ1 : 2.03 (0.11) R2dN8 : 0.391 R2N8 : 0.12
σ : 0.905
deviance : 371.33
__
_____
C
peak time of C : 1.6
E
wheather : radiation
threshold : 39.22
memory length : 4142
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 14.1
open length of G : 19

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
371.33 0.905 3.4 2.39 1.22 -4.54 3.52 -16.4 2.03 1.6 39.22 4142 14.1 19
485.95 1.03 3.67 2.32 1.11 -1.91 3.55 -- 2.34 1.84 -9.413 8072 13.8 19.2
414.81 0.949 3.38 2.26 1.16 -3.95 -- -14.5 2.06 2.22 38.78 4669 14.1 19
518.31 1.06 3.65 2.37 1.13 -1.75 -- -- 2.4 2.04 -13.01 8095 13.3 19.8
492.95 1.03 3.39 2.26 -- -3.99 -- -14.3 2.06 -- 39.07 4743 14.1 19
563.6 1.11 3.77 3.01 1.01 -- 2.98 -- 1.89 1.65 -- -- -- --
596.53 1.14 3.78 2.91 1.05 -- -- -- 1.87 2.43 -- -- -- --
578.95 1.12 3.67 2.76 -- -2.05 -- -- 2.41 -- -0.5138 6425 15.1 19.1
663.81 1.2 3.67 -- 1.17 -2.12 -- -- 2.23 1.68 -0.01636 8392 13.8 19.2
661.54 1.2 3.77 2.95 -- -- -- -- 1.9 -- -- -- -- --
819.6 1.34 3.85 -- 1.11 -- -- -- 1.55 2.47 -- -- -- --
714.65 1.25 3.75 -- -- -2.6 -- -- 2.21 -- 0.003854 9155 15.3 17.7
891.68 1.39 3.84 -- -- -- -- -- 1.57 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 358.23 wind 3.0 43200 < th dose dependent rect. 3 2
7 363.98 wind 3.0 43200 > th dose dependent rect. 5 1
9 365.57 precipitation 0.1 43200 > th dose independent rect. 16 1
10 365.70 precipitation 0.1 43200 > th dose dependent rect. 16 1
11 365.75 precipitation 0.1 43200 < th dose independent rect. 16 1
12 365.75 precipitation 0.1 43200 < th dose dependent rect. 16 1
13 365.78 humidity 70.0 14400 < th dose independent rect. 18 13
14 365.87 humidity 70.0 14400 < th dose independent rect. 18 3
24 366.34 humidity 90.0 43200 > th dose independent rect. 9 1
25 366.40 wind 3.0 43200 > th dose independent rect. 3 1
28 366.62 wind 3.0 43200 < th dose independent rect. 3 1
29 367.03 temperature 10.0 14400 > th dose dependent rect. 15 1
46 367.98 precipitation 0.1 43200 < th dose independent rect. 19 1
47 367.98 humidity 70.0 14400 > th dose independent rect. 19 13
48 367.98 precipitation 0.1 43200 < th dose dependent rect. 19 1
53 368.31 humidity 80.0 43200 > th dose dependent rect. 10 1
56 368.45 wind 3.0 14400 > th dose independent rect. 14 1
57 368.52 precipitation 0.1 43200 > th dose independent rect. 19 1
64 368.92 humidity 70.0 14400 > th dose independent rect. 18 4
76 369.20 wind 9.0 43200 < th dose dependent rect. 3 3
78 369.25 precipitation 0.1 43200 > th dose dependent rect. 19 1
80 369.30 wind 1.0 43200 > th dose dependent rect. 3 1
83 369.33 wind 1.0 43200 > th dose dependent rect. 3 3
100 370.02 temperature 25.0 14400 > th dose dependent rect. 13 14
174 370.97 temperature 25.0 14400 > th dose dependent sin 17 NA
233 371.45 radiation 10.0 43200 > th dose independent rect. 5 1
285 371.81 temperature 25.0 14400 > th dose dependent rect. 22 20
314 372.01 humidity 90.0 43200 < th dose independent rect. 9 1
335 372.12 wind 3.0 14400 < th dose independent rect. 14 1
347 372.19 temperature 25.0 14400 > th dose dependent no NA NA
423 372.63 humidity 80.0 43200 > th dose dependent rect. 9 8
432 372.67 humidity 80.0 43200 > th dose dependent rect. 9 5
578 373.81 wind 9.0 43200 > th dose dependent rect. 18 1
584 373.87 temperature 10.0 14400 > th dose dependent sin 20 NA
608 374.08 humidity 80.0 43200 > th dose dependent rect. 16 1
618 374.22 wind 3.0 43200 > th dose independent rect. 3 6
654 374.52 humidity 80.0 43200 > th dose independent rect. 13 2
745 375.25 temperature 25.0 14400 > th dose independent rect. 13 19
782 375.45 precipitation 0.1 43200 > th dose dependent rect. 13 1
806 375.65 temperature 25.0 14400 > th dose independent rect. 13 15
864 375.97 wind 9.0 43200 < th dose dependent rect. 24 6
878 376.08 humidity 80.0 43200 > th dose dependent rect. 15 3
889 376.18 temperature 30.0 14400 < th dose dependent rect. 18 1
891 376.18 wind 1.0 43200 > th dose dependent rect. 24 9
893 376.20 wind 3.0 43200 < th dose independent rect. 3 6
912 376.30 temperature 10.0 14400 > th dose dependent rect. 18 1
924 376.37 humidity 80.0 14400 > th dose independent rect. 13 9