Os05g0252000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Oligopeptide transporter OPT superfamily protein.
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Os05g0252000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Oligopeptide transporter OPT superfamily protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 190.8 | 0.649 | 2.82 | 0.262 | 0.0985 | -0.371 | 1.64 | -0.623 | 0.0618 | 5.99 | 1006 | 538 | -- | -- |
| 192.69 | 0.647 | 2.82 | 0.276 | 0.0884 | -0.386 | 1.61 | -- | 0.0857 | 5.85 | 1006 | 537 | -- | -- |
| 197.21 | 0.654 | 2.82 | 0.277 | 0.0937 | -0.356 | -- | -0.589 | 0.0514 | 5.95 | 1006 | 595 | -- | -- |
| 198.9 | 0.657 | 2.82 | 0.287 | 0.0854 | -0.369 | -- | -- | 0.0722 | 6.16 | 1006 | 595 | -- | -- |
| 197.5 | 0.655 | 2.82 | 0.285 | -- | -0.357 | -- | -0.578 | 0.0667 | -- | 1006 | 605 | -- | -- |
| 203.03 | 0.668 | 2.86 | 0.28 | 0.0328 | -- | 1.46 | -- | -0.0788 | 5.85 | -- | -- | -- | -- |
| 208.25 | 0.676 | 2.86 | 0.29 | 0.0424 | -- | -- | -- | -0.0848 | 4.82 | -- | -- | -- | -- |
| 199.28 | 0.657 | 2.83 | 0.283 | -- | -0.366 | -- | -- | 0.073 | -- | 1006 | 616 | -- | -- |
| 201.06 | 0.66 | 2.83 | -- | 0.091 | -0.37 | -- | -- | 0.042 | 5.97 | 1006 | 595 | -- | -- |
| 208.34 | 0.674 | 2.86 | 0.292 | -- | -- | -- | -- | -0.0837 | -- | -- | -- | -- | -- |
| 210.47 | 0.679 | 2.87 | -- | 0.0477 | -- | -- | -- | -0.117 | 4.64 | -- | -- | -- | -- |
| 201.32 | 0.661 | 2.83 | -- | -- | -0.387 | -- | -- | 0.0559 | -- | 1006 | 795 | -- | -- |
| 210.59 | 0.677 | 2.87 | -- | -- | -- | -- | -- | -0.116 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 173.76 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 22 | 1 |
| 2 | 173.76 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 3 | 174.59 | wind | 5.0 | 720 | < th | dose independent | rect. | 23 | 7 |
| 4 | 174.90 | wind | 5.0 | 720 | > th | dose independent | rect. | 23 | 4 |
| 8 | 175.31 | wind | 5.0 | 720 | > th | dose independent | rect. | 23 | 2 |
| 9 | 175.31 | wind | 5.0 | 720 | > th | dose dependent | rect. | 22 | 5 |
| 14 | 175.80 | wind | 5.0 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 19 | 176.12 | wind | 5.0 | 720 | > th | dose dependent | rect. | 22 | 10 |
| 29 | 176.53 | wind | 5.0 | 720 | > th | dose independent | rect. | 22 | 10 |
| 44 | 177.18 | wind | 7.0 | 90 | > th | dose independent | rect. | 7 | 2 |
| 51 | 177.18 | wind | 7.0 | 90 | > th | dose dependent | rect. | 7 | 2 |
| 69 | 177.51 | wind | 5.0 | 720 | > th | dose dependent | rect. | 1 | 2 |
| 171 | 179.98 | wind | 5.0 | 720 | < th | dose independent | rect. | 21 | 8 |
| 230 | 182.30 | radiation | 20.0 | 30 | > th | dose independent | sin | 11 | NA |
| 238 | 182.47 | radiation | 20.0 | 30 | < th | dose independent | sin | 11 | NA |
| 244 | 182.68 | wind | 1.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 254 | 182.78 | radiation | 20.0 | 90 | > th | dose independent | rect. | 7 | 2 |
| 258 | 182.87 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 22 | 3 |
| 266 | 183.10 | radiation | 20.0 | 30 | > th | dose independent | rect. | 16 | 16 |
| 299 | 183.30 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 23 | 9 |
| 327 | 184.10 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 328 | 184.10 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 329 | 184.14 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 22 | 1 |
| 338 | 184.27 | wind | 3.0 | 720 | < th | dose independent | rect. | 23 | 4 |
| 383 | 184.75 | wind | 5.0 | 720 | < th | dose independent | rect. | 19 | 10 |
| 390 | 184.88 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 21 | 5 |
| 393 | 184.96 | wind | 5.0 | 720 | > th | dose independent | sin | 10 | NA |
| 430 | 185.33 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 19 | 9 |
| 432 | 185.36 | wind | 5.0 | 720 | < th | dose independent | sin | 10 | NA |
| 440 | 185.52 | wind | 5.0 | 90 | > th | dose independent | rect. | 2 | 1 |
| 441 | 185.52 | wind | 5.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 443 | 185.53 | wind | 5.0 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 462 | 185.61 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 24 | 1 |
| 541 | 186.42 | wind | 5.0 | 720 | < th | dose dependent | rect. | 24 | 1 |
| 601 | 187.23 | radiation | 10.0 | 30 | > th | dose dependent | rect. | 17 | 15 |
| 604 | 187.25 | radiation | 10.0 | 30 | > th | dose dependent | rect. | 6 | 2 |
| 618 | 187.35 | atmosphere | 1005.0 | 720 | > th | dose independent | sin | 13 | NA |
| 639 | 187.50 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 22 | 3 |
| 645 | 187.57 | radiation | 10.0 | 270 | > th | dose dependent | rect. | 7 | 1 |
| 672 | 187.64 | wind | 3.0 | 720 | > th | dose dependent | sin | 10 | NA |
| 696 | 187.77 | wind | 7.0 | 720 | < th | dose dependent | rect. | 23 | 6 |
| 726 | 188.02 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 840 | 188.69 | atmosphere | 1005.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 936 | 188.97 | radiation | 20.0 | 30 | < th | dose dependent | sin | 10 | NA |
| 939 | 188.98 | wind | 9.0 | 720 | < th | dose dependent | rect. | 18 | 9 |
| 948 | 189.04 | atmosphere | 1010.0 | 720 | < th | dose dependent | rect. | 22 | 3 |
| 950 | 189.05 | atmosphere | 1005.0 | 720 | < th | dose independent | sin | 12 | NA |
| 968 | 189.14 | wind | 9.0 | 720 | < th | dose dependent | rect. | 18 | 11 |
| 992 | 189.19 | atmosphere | 1010.0 | 720 | < th | dose dependent | rect. | 23 | 1 |