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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0249900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.27 (0.0182) R2 : 0.00758
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0715 (0.0383) R2dN8 : 0.00979 R2N8 : 0.00758
σ : 0.343
deviance : 53.88
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
46.54 0.321 3.32 -0.295 0.134 3.15 0.136 -13.2 -0.0396 8.59 999.1 7 -- --
46.23 0.319 3.26 0.0502 0.145 1.28 0.163 -- -0.0448 8.35 997.1 11 -- --
46.6 0.318 3.32 -0.287 0.134 3.13 -- -13.2 -0.0397 8.45 999.1 6 -- --
46.25 0.317 3.26 0.0556 0.146 1.29 -- -- -0.0453 8.23 997 6 -- --
47.61 0.321 3.32 -0.29 -- 3.14 -- -13.2 -0.038 -- 999.2 6 -- --
52.64 0.34 3.26 0.0938 0.129 -- 0.124 -- -0.0617 8.69 -- -- -- --
52.69 0.34 3.26 0.0977 0.13 -- -- -- -0.0618 8.55 -- -- -- --
47.42 0.321 3.26 0.0571 -- 1.25 -- -- -0.0437 -- 997 6 -- --
46.33 0.317 3.26 -- 0.146 1.3 -- -- -0.0512 8.2 997 6 -- --
53.63 0.342 3.27 0.0981 -- -- -- -- -0.0606 -- -- -- -- --
52.94 0.34 3.27 -- 0.13 -- -- -- -0.0727 8.5 -- -- -- --
47.51 0.321 3.26 -- -- 1.26 -- -- -0.0497 -- 997.1 6 -- --
53.88 0.343 3.27 -- -- -- -- -- -0.0715 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.76 atmosphere 1000 90 < th dose independent rect. 12 1
2 43.79 atmosphere 1000 90 < th dose dependent rect. 12 1
5 43.83 humidity 50 90 < th dose dependent rect. 13 2
6 43.85 humidity 50 90 < th dose independent rect. 13 2
23 44.69 atmosphere 1000 90 < th dose dependent rect. 1 14
24 44.80 atmosphere 1000 10 < th dose dependent rect. 1 14
47 45.36 humidity 80 14400 < th dose dependent rect. 2 7
84 45.75 atmosphere 1000 10 < th dose dependent rect. 22 17
97 45.84 atmosphere 1000 90 < th dose dependent rect. 21 18
99 45.86 atmosphere 1000 270 < th dose dependent rect. 9 5
104 45.89 humidity 80 14400 < th dose dependent rect. 21 13
123 46.00 atmosphere 1000 10 < th dose dependent rect. 22 20
144 46.10 temperature 25 90 > th dose dependent rect. 2 2
153 46.12 atmosphere 1000 10 < th dose dependent rect. 13 21
168 46.18 atmosphere 1000 10 < th dose dependent sin 2 NA
206 46.29 atmosphere 1000 270 < th dose independent rect. 10 4
209 46.31 temperature 25 90 > th dose independent rect. 2 2
227 46.38 atmosphere 1000 10 < th dose dependent rect. 13 16
240 46.44 temperature 30 90 > th dose dependent rect. 12 3
254 46.50 temperature 30 90 > th dose dependent rect. 13 1
259 46.52 atmosphere 1000 10 < th dose dependent rect. 6 23
264 46.55 atmosphere 1000 10 < th dose dependent rect. 13 19
270 46.56 atmosphere 1000 10 < th dose dependent rect. 16 23
305 46.64 atmosphere 1000 10 < th dose dependent rect. 18 21
308 46.64 atmosphere 1000 10 < th dose dependent rect. 9 23
314 46.66 atmosphere 1000 10 < th dose dependent no NA NA
317 46.66 atmosphere 1000 10 < th dose dependent rect. 3 23
334 46.72 humidity 70 14400 > th dose independent rect. 5 5
337 46.72 humidity 70 14400 > th dose independent rect. 1 9
338 46.72 humidity 70 14400 > th dose independent rect. 21 13
343 46.72 atmosphere 1000 90 < th dose dependent rect. 17 22
422 46.85 humidity 70 14400 < th dose independent rect. 8 2
432 46.88 humidity 70 14400 < th dose independent rect. 6 4
485 46.97 temperature 25 10 > th dose dependent rect. 2 3
511 47.03 temperature 30 4320 < th dose independent rect. 3 7
515 47.04 temperature 30 4320 > th dose dependent rect. 9 1
534 47.08 temperature 30 4320 < th dose independent rect. 20 14
553 47.09 temperature 30 4320 > th dose independent rect. 9 1
564 47.11 temperature 30 4320 < th dose independent rect. 23 11
565 47.11 atmosphere 1000 270 < th dose independent rect. 23 15
567 47.11 temperature 30 4320 > th dose dependent rect. 9 4
586 47.12 temperature 30 4320 > th dose dependent sin 8 NA
609 47.14 temperature 30 4320 < th dose independent rect. 8 2
668 47.21 temperature 30 4320 < th dose independent sin 8 NA
766 47.28 temperature 30 4320 > th dose independent sin 8 NA
785 47.32 atmosphere 1000 720 < th dose independent rect. 19 18
788 47.32 temperature 30 30 > th dose dependent rect. 13 21
808 47.37 atmosphere 1000 10 < th dose independent rect. 2 2
812 47.37 atmosphere 1000 10 < th dose dependent rect. 2 2
838 47.40 atmosphere 1000 90 < th dose independent rect. 2 1
842 47.40 atmosphere 1000 90 < th dose dependent rect. 2 1
919 47.45 atmosphere 1000 720 < th dose independent rect. 2 11
926 47.45 humidity 50 4320 > th dose dependent rect. 23 15
930 47.46 temperature 30 1440 > th dose independent rect. 15 20
986 47.50 atmosphere 1000 720 > th dose independent rect. 19 16
991 47.50 atmosphere 1000 720 < th dose dependent sin 6 NA