Os05g0249300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os05g0249300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110.13 | 0.493 | 11.4 | -1.32 | 2.9 | 0.71 | 1.42 | -1.83 | 0.139 | 7.63 | 10.01 | 1430 | -- | -- |
| 115.98 | 0.502 | 11.4 | -1.11 | 2.86 | 0.653 | 1.55 | -- | 0.169 | 7.71 | 10 | 1398 | -- | -- |
| 114.51 | 0.498 | 11.4 | -1.29 | 2.95 | 0.729 | -- | -2.05 | 0.135 | 7.68 | 10 | 1360 | -- | -- |
| 121.17 | 0.513 | 11.4 | -1.03 | 2.87 | 0.646 | -- | -- | 0.248 | 7.64 | 10.01 | 1417 | -- | -- |
| 487.97 | 1.03 | 11.4 | -0.721 | -- | 0.93 | -- | 0.0117 | 0.448 | -- | 2.361 | 1515 | -- | -- |
| 128.11 | 0.531 | 11.3 | -0.819 | 2.9 | -- | 1.41 | -- | 0.453 | 7.61 | -- | -- | -- | -- |
| 133.72 | 0.542 | 11.3 | -0.785 | 2.9 | -- | -- | -- | 0.451 | 7.6 | -- | -- | -- | -- |
| 482.7 | 1.03 | 11.4 | -0.757 | -- | 0.956 | -- | -- | 0.472 | -- | 1.09 | 1512 | -- | -- |
| 144.98 | 0.561 | 11.3 | -- | 2.89 | 0.456 | -- | -- | 0.459 | 7.56 | 39.82 | 1745 | -- | -- |
| 584.81 | 1.13 | 11.4 | -0.744 | -- | -- | -- | -- | 0.494 | -- | -- | -- | -- | -- |
| 149.96 | 0.573 | 11.3 | -- | 2.89 | -- | -- | -- | 0.538 | 7.62 | -- | -- | -- | -- |
| 497.8 | 1.04 | 11.4 | -- | -- | 0.954 | -- | -- | 0.556 | -- | 1.09 | 1512 | -- | -- |
| 599.42 | 1.14 | 11.4 | -- | -- | -- | -- | -- | 0.577 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 103.29 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 3 | 103.84 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 5 | 103.91 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 8 | 103.95 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 15 |
| 40 | 105.05 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 15 |
| 46 | 105.21 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 69 | 105.71 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 92 | 106.33 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 93 | 106.41 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 94 | 106.45 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 96 | 106.52 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 98 | 106.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 101 | 106.56 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 110 | 106.77 | radiation | 10 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 133 | 107.21 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 146 | 107.48 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 3 |
| 173 | 107.81 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 178 | 107.82 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 192 | 108.00 | humidity | 60 | 720 | > th | dose dependent | rect. | 19 | 6 |
| 220 | 108.19 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 4 |
| 224 | 108.24 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 3 |
| 235 | 108.36 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 237 | 108.38 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 248 | 108.45 | humidity | 80 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 252 | 108.48 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 286 | 108.61 | humidity | 80 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 331 | 109.11 | radiation | 10 | 1440 | > th | dose independent | sin | 22 | NA |
| 372 | 109.21 | humidity | 80 | 720 | > th | dose independent | rect. | 5 | 21 |
| 389 | 109.30 | humidity | 80 | 720 | < th | dose independent | rect. | 20 | 1 |
| 395 | 109.32 | radiation | 10 | 1440 | < th | dose dependent | sin | 19 | NA |
| 411 | 109.41 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 9 |
| 415 | 109.41 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 16 |
| 417 | 109.42 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 14 |
| 422 | 109.43 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 14 |
| 474 | 109.71 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 493 | 109.76 | humidity | 80 | 720 | > th | dose independent | rect. | 6 | 17 |
| 527 | 109.83 | humidity | 70 | 720 | > th | dose dependent | rect. | 6 | 19 |
| 574 | 110.03 | humidity | 80 | 720 | > th | dose independent | rect. | 9 | 22 |
| 579 | 110.08 | humidity | 80 | 720 | > th | dose independent | rect. | 20 | 3 |
| 584 | 110.11 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 618 | 110.18 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 692 | 110.20 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 13 |
| 697 | 110.20 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 20 |
| 702 | 110.21 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 18 |
| 718 | 110.22 | humidity | 80 | 720 | > th | dose dependent | rect. | 10 | 14 |
| 776 | 110.34 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 6 |
| 814 | 110.50 | humidity | 80 | 720 | > th | dose independent | sin | 17 | NA |
| 841 | 110.55 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 845 | 110.57 | humidity | 80 | 720 | > th | dose independent | rect. | 19 | 5 |
| 875 | 110.65 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 910 | 110.76 | radiation | 1 | 1440 | < th | dose independent | sin | 22 | NA |
| 991 | 110.93 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 13 |