Os05g0248300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0248300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 177.7 | 0.626 | 2.87 | 0.538 | 0.246 | -2.14 | 0.313 | 18 | 0.00491 | 4.29 | 0.8362 | 94 | 3.97 | 1.1 |
| 206.17 | 0.674 | 2.94 | 0.0689 | 0.282 | -0.481 | 0.897 | -- | 0.00448 | 4.92 | 0.8362 | 94 | 3.97 | 1.1 |
| 177.86 | 0.621 | 2.88 | 0.509 | 0.247 | -2.18 | -- | 18.4 | -0.00666 | 4.08 | 0.7692 | 96 | 3.95 | 1.12 |
| 207.16 | 0.675 | 2.94 | 0.0738 | 0.325 | -0.401 | -- | -- | 0.0107 | 4.44 | 4.386 | 35 | 4.03 | 1.17 |
| 180.59 | 0.626 | 2.89 | 0.422 | -- | -1.9 | -- | 18.1 | -0.00327 | -- | 0.5863 | 100 | 3.94 | 1.1 |
| 207.13 | 0.675 | 2.94 | 0.063 | 0.259 | -- | 0.861 | -- | 0.0112 | 4.95 | -- | -- | -- | -- |
| 208.93 | 0.677 | 2.95 | 0.0601 | 0.265 | -- | -- | -- | 0.00676 | 4.35 | -- | -- | -- | -- |
| 212.21 | 0.681 | 2.95 | 0.078 | -- | -0.289 | -- | -- | 0.0082 | -- | 1.851 | 30 | 4.07 | 0.917 |
| 207.3 | 0.674 | 2.95 | -- | 0.325 | -0.395 | -- | -- | 0.00241 | 4.43 | 4.386 | 35 | 4.03 | 1.17 |
| 212.72 | 0.682 | 2.95 | 0.0706 | -- | -- | -- | -- | 0.0138 | -- | -- | -- | -- | -- |
| 209.03 | 0.676 | 2.95 | -- | 0.267 | -- | -- | -- | 7.23e-05 | 4.35 | -- | -- | -- | -- |
| 212.35 | 0.679 | 2.95 | -- | -- | -0.278 | -- | -- | -7.84e-05 | -- | 1.9 | 31 | 4.02 | 0.767 |
| 212.85 | 0.681 | 2.95 | -- | -- | -- | -- | -- | 0.00597 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 178.31 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 2 | 180.06 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 3 | 186.22 | temperature | 20.0 | 10 | < th | dose independent | rect. | 6 | 2 |
| 5 | 186.71 | temperature | 20.0 | 30 | > th | dose independent | sin | 0 | NA |
| 6 | 186.81 | temperature | 20.0 | 30 | < th | dose independent | sin | 0 | NA |
| 9 | 187.34 | temperature | 20.0 | 10 | < th | dose independent | rect. | 6 | 13 |
| 11 | 187.48 | temperature | 20.0 | 90 | > th | dose independent | rect. | 3 | 12 |
| 25 | 188.05 | temperature | 20.0 | 10 | > th | dose independent | rect. | 4 | 11 |
| 27 | 188.58 | temperature | 20.0 | 90 | < th | dose independent | rect. | 5 | 13 |
| 34 | 189.09 | temperature | 20.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 61 | 189.90 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 6 | 13 |
| 69 | 190.08 | temperature | 20.0 | 30 | < th | dose independent | rect. | 3 | 16 |
| 80 | 190.38 | wind | 7.0 | 270 | > th | dose dependent | rect. | 23 | 6 |
| 83 | 190.39 | wind | 7.0 | 270 | > th | dose independent | rect. | 23 | 6 |
| 104 | 190.47 | temperature | 20.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 108 | 190.50 | wind | 5.0 | 270 | > th | dose independent | rect. | 1 | 1 |
| 109 | 190.50 | wind | 5.0 | 270 | > th | dose dependent | rect. | 1 | 1 |
| 110 | 190.51 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 1 |
| 112 | 190.51 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 24 | 1 |
| 132 | 190.67 | wind | 3.0 | 90 | > th | dose dependent | rect. | 1 | 6 |
| 135 | 190.69 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 6 | 2 |
| 155 | 190.79 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 6 | 6 |
| 238 | 191.27 | wind | 5.0 | 10 | > th | dose independent | rect. | 8 | 1 |
| 240 | 191.27 | wind | 5.0 | 10 | > th | dose dependent | rect. | 8 | 1 |
| 420 | 192.91 | atmosphere | 1005.0 | 30 | < th | dose independent | rect. | 1 | 3 |
| 491 | 193.87 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 24 | 1 |
| 495 | 193.90 | humidity | 90.0 | 90 | < th | dose independent | rect. | 2 | 3 |
| 527 | 194.43 | temperature | 20.0 | 90 | > th | dose independent | rect. | 3 | 22 |
| 577 | 195.24 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 5 |
| 589 | 195.32 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 2 | 3 |
| 616 | 195.44 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 628 | 195.51 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 2 |
| 675 | 195.96 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 5 | 1 |
| 797 | 196.44 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 1 | 8 |
| 812 | 196.61 | wind | 3.0 | 10 | > th | dose dependent | rect. | 1 | 4 |
| 826 | 196.72 | humidity | 50.0 | 10 | > th | dose independent | rect. | 4 | 22 |
| 834 | 196.77 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 838 | 196.80 | wind | 5.0 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 861 | 196.99 | wind | 3.0 | 10 | > th | dose independent | rect. | 2 | 1 |
| 866 | 197.01 | wind | 5.0 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 880 | 197.08 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 9 |
| 890 | 197.18 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 899 | 197.28 | temperature | 20.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 900 | 197.28 | wind | 3.0 | 10 | < th | dose independent | rect. | 2 | 2 |
| 930 | 197.41 | wind | 3.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 972 | 197.56 | wind | 3.0 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 976 | 197.60 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 5 | 4 |
| 992 | 197.67 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 994 | 197.68 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 2 | 1 |