Os05g0248200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycoside hydrolase, family 18 protein.
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Os05g0248200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycoside hydrolase, family 18 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 248.64 | 0.741 | 2.97 | 0.601 | 0.26 | 2.75 | -0.142 | 4.3 | 0.169 | 23.1 | 19.27 | 5044 | -- | -- |
| 252.02 | 0.739 | 2.86 | 0.695 | 0.23 | 0.959 | -0.0299 | -- | 0.233 | 21.3 | 22.09 | 6095 | -- | -- |
| 248.72 | 0.735 | 2.97 | 0.602 | 0.265 | 2.74 | -- | 4.29 | 0.164 | 23.1 | 19.22 | 5043 | -- | -- |
| 251.32 | 0.738 | 2.87 | 0.612 | 0.255 | 0.885 | -- | -- | 0.234 | 22.8 | 22.95 | 6205 | -- | -- |
| 251.97 | 0.739 | 2.97 | 0.674 | -- | 2.92 | -- | 4.57 | 0.188 | -- | 19.48 | 5975 | -- | -- |
| 260.08 | 0.756 | 2.91 | 0.155 | 0.24 | -- | -0.138 | -- | 0.0296 | 23 | -- | -- | -- | -- |
| 260.16 | 0.755 | 2.91 | 0.161 | 0.241 | -- | -- | -- | 0.0301 | 22.9 | -- | -- | -- | -- |
| 254.89 | 0.747 | 2.88 | 0.325 | -- | 0.811 | -- | -- | 0.134 | -- | 22.95 | 6205 | -- | -- |
| 255.81 | 0.745 | 2.9 | -- | 0.273 | 0.48 | -- | -- | 0.0794 | 23.1 | 35 | 3505 | -- | -- |
| 263.77 | 0.759 | 2.9 | 0.166 | -- | -- | -- | -- | 0.0318 | -- | -- | -- | -- | -- |
| 260.85 | 0.756 | 2.91 | -- | 0.242 | -- | -- | -- | 0.0122 | 23 | -- | -- | -- | -- |
| 257.48 | 0.75 | 2.89 | -- | -- | 0.696 | -- | -- | 0.0859 | -- | 22.95 | 6205 | -- | -- |
| 264.49 | 0.759 | 2.91 | -- | -- | -- | -- | -- | 0.0134 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 243.66 | humidity | 50.0 | 10 | < th | dose dependent | rect. | 13 | 5 |
| 19 | 243.75 | humidity | 50.0 | 10 | < th | dose independent | rect. | 13 | 5 |
| 73 | 245.71 | humidity | 50.0 | 10 | < th | dose independent | sin | 13 | NA |
| 74 | 245.96 | humidity | 50.0 | 10 | < th | dose dependent | sin | 12 | NA |
| 75 | 246.18 | temperature | 20.0 | 30 | < th | dose independent | rect. | 3 | 8 |
| 81 | 246.79 | humidity | 50.0 | 10 | > th | dose independent | sin | 13 | NA |
| 82 | 247.16 | wind | 3.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 83 | 247.18 | humidity | 50.0 | 90 | < th | dose dependent | rect. | 12 | 2 |
| 84 | 247.20 | humidity | 50.0 | 90 | < th | dose independent | rect. | 13 | 1 |
| 112 | 247.26 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 11 | 1 |
| 113 | 247.29 | temperature | 20.0 | 90 | < th | dose independent | rect. | 3 | 2 |
| 176 | 247.44 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 199 | 247.59 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 8 | 4 |
| 259 | 247.72 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 10 | 2 |
| 287 | 247.84 | radiation | 10.0 | 10 | < th | dose independent | rect. | 10 | 2 |
| 309 | 247.91 | temperature | 20.0 | 10 | < th | dose independent | rect. | 3 | 3 |
| 317 | 248.06 | wind | 9.0 | 720 | > th | dose dependent | rect. | 12 | 6 |
| 320 | 248.11 | humidity | 90.0 | 30 | < th | dose independent | rect. | 3 | 1 |
| 322 | 248.12 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 12 | 1 |
| 328 | 248.16 | humidity | 80.0 | 90 | < th | dose independent | rect. | 2 | 3 |
| 330 | 248.17 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 2 | 3 |
| 335 | 248.20 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 339 | 248.21 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 346 | 248.24 | radiation | 10.0 | 90 | < th | dose independent | rect. | 8 | 4 |
| 378 | 248.38 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 394 | 248.51 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 395 | 248.52 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 447 | 248.70 | wind | 9.0 | 720 | > th | dose dependent | rect. | 12 | 11 |
| 454 | 248.70 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 463 | 248.73 | wind | 3.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 467 | 248.74 | radiation | 20.0 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 490 | 248.76 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 522 | 248.81 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 528 | 248.82 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 15 | 14 |
| 529 | 248.82 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 530 | 248.82 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 22 | 8 |
| 560 | 248.91 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 11 | 21 |
| 563 | 248.94 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 573 | 249.00 | temperature | 20.0 | 30 | < th | dose independent | sin | 5 | NA |
| 589 | 249.06 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 11 |
| 594 | 249.08 | radiation | 10.0 | 4320 | < th | dose independent | sin | 13 | NA |
| 595 | 249.08 | wind | 7.0 | 90 | > th | dose independent | rect. | 21 | 1 |
| 605 | 249.11 | wind | 7.0 | 30 | > th | dose independent | rect. | 20 | 12 |
| 615 | 249.13 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 618 | 249.13 | wind | 7.0 | 30 | > th | dose independent | rect. | 20 | 8 |
| 632 | 249.14 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 639 | 249.16 | temperature | 20.0 | 30 | > th | dose independent | sin | 5 | NA |
| 645 | 249.16 | wind | 7.0 | 30 | > th | dose dependent | rect. | 20 | 12 |
| 650 | 249.17 | wind | 7.0 | 30 | > th | dose dependent | rect. | 21 | 8 |
| 660 | 249.18 | wind | 7.0 | 90 | > th | dose dependent | rect. | 21 | 1 |
| 673 | 249.20 | wind | 7.0 | 30 | > th | dose dependent | rect. | 21 | 5 |
| 684 | 249.21 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 711 | 249.24 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 21 | 1 |
| 716 | 249.24 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 21 | 1 |
| 734 | 249.27 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 8 |
| 761 | 249.34 | temperature | 20.0 | 4320 | < th | dose dependent | sin | 8 | NA |
| 794 | 249.37 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 804 | 249.40 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 806 | 249.41 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 826 | 249.43 | wind | 7.0 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 840 | 249.44 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 841 | 249.44 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 14 | 18 |
| 852 | 249.46 | wind | 7.0 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 870 | 249.50 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 4 | 14 |
| 881 | 249.50 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 895 | 249.51 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 4 | 19 |
| 913 | 249.52 | radiation | 10.0 | 4320 | < th | dose independent | no | NA | NA |
| 990 | 249.55 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 18 | 7 |