Os05g0247600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-directed DNA polymerase (Reverse transcriptase) domain containing protein.
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Os05g0247600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-directed DNA polymerase (Reverse transcriptase) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.8 | 0.448 | 2.32 | 3.71 | 0.0574 | -50.7 | 0.224 | 310 | 0.0981 | 15.3 | 994.9 | 669 | -- | -- |
| 98.13 | 0.465 | 2.93 | 0.00634 | 0.0258 | 0.177 | 0.133 | -- | 0.0926 | 15.4 | 995.8 | 371 | -- | -- |
| 90.9 | 0.444 | 2.32 | 3.66 | 0.0514 | -51 | -- | 311 | 0.102 | 14.2 | 994.8 | 668 | -- | -- |
| 97.14 | 0.459 | 2.93 | -0.0204 | 0.0332 | 0.443 | -- | -- | 0.099 | 15.8 | 994.7 | 709 | -- | -- |
| 90.95 | 0.444 | 2.36 | 3.45 | -- | -51.1 | -- | 312 | 0.0972 | -- | 994.7 | 657 | -- | -- |
| 98.19 | 0.465 | 2.93 | 0.00908 | 0.0285 | -- | 0.148 | -- | 0.0915 | 15.6 | -- | -- | -- | -- |
| 98.24 | 0.464 | 2.93 | 0.0116 | 0.0317 | -- | -- | -- | 0.0922 | 13.7 | -- | -- | -- | -- |
| 97.18 | 0.459 | 2.93 | -0.00338 | -- | 0.468 | -- | -- | 0.0973 | -- | 994.6 | 711 | -- | -- |
| 97.07 | 0.459 | 2.93 | -- | 0.0388 | 0.487 | -- | -- | 0.0969 | 12.6 | 994.7 | 709 | -- | -- |
| 98.31 | 0.463 | 2.93 | 0.0103 | -- | -- | -- | -- | 0.0915 | -- | -- | -- | -- | -- |
| 98.25 | 0.464 | 2.93 | -- | 0.0315 | -- | -- | -- | 0.0909 | 13.7 | -- | -- | -- | -- |
| 97.18 | 0.459 | 2.93 | -- | -- | 0.468 | -- | -- | 0.0976 | -- | 994.6 | 708 | -- | -- |
| 98.31 | 0.463 | 2.93 | -- | -- | -- | -- | -- | 0.0904 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.91 | humidity | 50 | 90 | < th | dose independent | rect. | 13 | 2 |
| 2 | 87.91 | humidity | 50 | 90 | < th | dose dependent | rect. | 13 | 2 |
| 5 | 88.12 | humidity | 50 | 10 | < th | dose dependent | sin | 12 | NA |
| 26 | 88.43 | humidity | 50 | 10 | < th | dose independent | sin | 12 | NA |
| 28 | 88.44 | humidity | 50 | 10 | > th | dose independent | sin | 12 | NA |
| 30 | 88.45 | humidity | 50 | 30 | < th | dose independent | rect. | 13 | 5 |
| 70 | 88.59 | humidity | 50 | 90 | < th | dose dependent | sin | 7 | NA |
| 91 | 88.79 | humidity | 50 | 90 | < th | dose independent | rect. | 10 | 5 |
| 109 | 88.86 | humidity | 50 | 10 | < th | dose dependent | rect. | 13 | 4 |
| 264 | 89.82 | humidity | 50 | 10 | < th | dose independent | rect. | 13 | 1 |
| 569 | 90.38 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 1 | 1 |
| 576 | 90.38 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 1 | 1 |
| 591 | 90.45 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 1 |
| 595 | 90.55 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 622 | 90.68 | atmosphere | 995 | 720 | < th | dose independent | rect. | 14 | 1 |
| 663 | 90.68 | atmosphere | 995 | 720 | < th | dose dependent | rect. | 14 | 1 |
| 704 | 90.69 | atmosphere | 995 | 720 | < th | dose independent | sin | 6 | NA |
| 713 | 90.74 | atmosphere | 995 | 720 | > th | dose independent | sin | 6 | NA |
| 765 | 90.94 | atmosphere | 995 | 720 | < th | dose dependent | sin | 7 | NA |
| 875 | 91.61 | humidity | 50 | 90 | < th | dose independent | sin | 7 | NA |