Os05g0245700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0245700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 174.9 | 0.621 | 3.8 | -0.381 | 0.805 | -1.56 | 0.263 | 0.849 | 0.395 | 13.6 | 24.6 | 1688 | -- | -- |
| 175.75 | 0.617 | 3.78 | -0.129 | 0.8 | -1.51 | 0.293 | -- | 0.47 | 13.5 | 24.6 | 1694 | -- | -- |
| 175.16 | 0.616 | 3.8 | -0.375 | 0.804 | -1.56 | -- | 0.855 | 0.396 | 13.5 | 24.65 | 1698 | -- | -- |
| 175.99 | 0.618 | 3.77 | -0.113 | 0.803 | -1.53 | -- | -- | 0.485 | 13.5 | 24.76 | 1700 | -- | -- |
| 214.69 | 0.682 | 3.81 | -0.409 | -- | -1.6 | -- | 0.862 | 0.383 | -- | 24.75 | 1698 | -- | -- |
| 242.53 | 0.73 | 3.66 | 0.411 | 0.824 | -- | 0.322 | -- | 1 | 14 | -- | -- | -- | -- |
| 242.93 | 0.73 | 3.66 | 0.421 | 0.824 | -- | -- | -- | 1 | 14 | -- | -- | -- | -- |
| 215.51 | 0.684 | 3.78 | -0.148 | -- | -1.54 | -- | -- | 0.465 | -- | 24.73 | 1698 | -- | -- |
| 176.29 | 0.618 | 3.77 | -- | 0.805 | -1.5 | -- | -- | 0.508 | 13.5 | 24.79 | 1700 | -- | -- |
| 283.88 | 0.787 | 3.67 | 0.386 | -- | -- | -- | -- | 0.984 | -- | -- | -- | -- | -- |
| 247.59 | 0.736 | 3.67 | -- | 0.817 | -- | -- | -- | 0.956 | 14 | -- | -- | -- | -- |
| 216.04 | 0.685 | 3.78 | -- | -- | -1.5 | -- | -- | 0.494 | -- | 24.78 | 1699 | -- | -- |
| 287.81 | 0.792 | 3.68 | -- | -- | -- | -- | -- | 0.941 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 163.35 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 15 |
| 3 | 164.26 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 35 | 170.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 15 |
| 94 | 172.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 106 | 172.44 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 109 | 172.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 150 | 173.14 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 169 | 173.42 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 177 | 173.54 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 17 |
| 246 | 174.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 9 |
| 262 | 175.23 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 268 | 175.30 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 296 | 175.65 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 10 |
| 309 | 175.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 6 |
| 311 | 175.87 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 19 |
| 329 | 175.97 | temperature | 25 | 1440 | < th | dose independent | sin | 16 | NA |
| 343 | 176.09 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 398 | 176.36 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 414 | 176.44 | temperature | 25 | 1440 | > th | dose independent | sin | 16 | NA |
| 426 | 176.51 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 19 |
| 440 | 176.56 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 487 | 176.73 | temperature | 25 | 1440 | < th | dose independent | rect. | 5 | 22 |
| 518 | 176.81 | temperature | 30 | 1440 | < th | dose dependent | sin | 12 | NA |
| 554 | 176.91 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 610 | 177.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 13 |
| 613 | 177.06 | temperature | 25 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 663 | 177.19 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 670 | 177.20 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 696 | 177.27 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 722 | 177.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 11 |
| 774 | 177.45 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 783 | 177.47 | temperature | 25 | 1440 | > th | dose independent | rect. | 4 | 22 |
| 935 | 177.85 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 946 | 177.86 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 954 | 177.89 | temperature | 25 | 720 | > th | dose independent | rect. | 21 | 15 |
| 973 | 177.92 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 990 | 177.96 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 23 |