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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0242600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Prefoldin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0314) R2 : 0.0801
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.417 (0.0661) R2dN8 : 0.103 R2N8 : 0.0801
σ : 0.591
deviance : 160.44
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
152.5 0.58 2.98 -0.111 0.175 -0.484 0.387 1.87 0.398 21.2 1 15 -- --
155.6 0.581 2.96 -0.0311 0.164 -0.322 0.298 -- 0.421 21 1.18 10 -- --
152.94 0.576 2.98 -0.126 0.183 -0.503 -- 1.85 0.397 20.2 1.001 15 -- --
155.77 0.581 2.96 -0.0531 0.179 -0.315 -- -- 0.434 20.1 1.21 8 -- --
154.76 0.579 2.98 -0.117 -- -0.456 -- 1.76 0.398 -- 1.018 15 -- --
158.47 0.59 2.96 0.00662 0.155 -- 0.347 -- 0.416 23 -- -- -- --
158.98 0.59 2.96 -0.00753 0.153 -- -- -- 0.415 23 -- -- -- --
157.42 0.584 2.96 -0.0401 -- -0.3 -- -- 0.423 -- 1.169 8 -- --
155.84 0.581 2.96 -- 0.178 -0.308 -- -- 0.44 20.1 1.225 8 -- --
160.44 0.592 2.96 -0.00406 -- -- -- -- 0.416 -- -- -- -- --
158.99 0.59 2.96 -- 0.153 -- -- -- 0.416 23 -- -- -- --
157.44 0.584 2.96 -- -- -0.325 -- -- 0.426 -- 1.041 8 -- --
160.44 0.591 2.96 -- -- -- -- -- 0.417 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 148.45 temperature 20.0 10 < th dose independent rect. 11 1
7 148.45 humidity 90.0 90 > th dose independent rect. 10 1
9 148.45 precipitation 0.1 90 > th dose independent rect. 10 1
24 148.45 temperature 20.0 10 < th dose dependent rect. 11 1
30 148.45 humidity 90.0 90 > th dose dependent rect. 10 1
32 148.45 precipitation 0.1 90 > th dose dependent rect. 10 1
70 149.71 wind 1.0 30 > th dose independent rect. 2 1
72 149.83 wind 3.0 10 < th dose independent rect. 2 1
77 149.94 atmosphere 1005.0 30 > th dose independent rect. 2 1
80 150.00 temperature 30.0 30 < th dose dependent rect. 2 1
81 150.00 atmosphere 1005.0 30 > th dose dependent rect. 2 1
83 150.03 wind 9.0 30 < th dose dependent rect. 2 1
86 150.04 temperature 10.0 30 > th dose independent rect. 2 1
88 150.04 temperature 30.0 30 < th dose independent rect. 2 1
89 150.04 humidity 50.0 30 > th dose independent rect. 2 1
92 150.04 atmosphere 995.0 30 > th dose independent rect. 2 1
93 150.04 atmosphere 1010.0 30 < th dose independent rect. 2 1
95 150.04 radiation 1.0 30 < th dose independent rect. 2 1
100 150.04 precipitation 0.1 30 < th dose independent rect. 2 1
101 150.04 temperature 10.0 30 > th dose independent rect. 3 23
103 150.04 atmosphere 995.0 30 > th dose dependent rect. 2 1
105 150.04 radiation 1.0 30 < th dose dependent rect. 2 1
110 150.04 precipitation 0.1 30 < th dose dependent rect. 2 1
113 150.06 humidity 50.0 30 > th dose dependent rect. 2 1
118 150.11 temperature 10.0 30 > th dose dependent rect. 2 1
119 150.12 atmosphere 1015.0 30 < th dose dependent rect. 2 1
184 151.64 wind 1.0 10 > th dose independent sin 18 NA
186 151.73 wind 1.0 10 > th dose independent rect. 15 23
189 151.80 atmosphere 995.0 10 > th dose independent rect. 3 23
190 151.84 wind 9.0 1440 < th dose independent rect. 3 1
191 151.84 temperature 10.0 1440 > th dose independent rect. 3 1
194 151.84 temperature 30.0 1440 < th dose independent rect. 3 1
198 151.84 humidity 50.0 1440 > th dose independent rect. 3 1
207 151.84 atmosphere 995.0 1440 > th dose independent rect. 3 1
208 151.84 radiation 1.0 1440 < th dose independent rect. 3 1
228 151.84 temperature 10.0 1440 > th dose independent rect. 4 23
231 151.84 radiation 1.0 1440 < th dose dependent rect. 3 1
240 151.84 radiation 20.0 43200 < th dose dependent rect. 3 1
254 152.01 wind 1.0 90 < th dose independent rect. 24 1
258 152.09 radiation 30.0 30 > th dose dependent rect. 14 20
260 152.11 humidity 90.0 720 > th dose independent rect. 2 3
267 152.23 wind 9.0 30 < th dose independent rect. 3 23
270 152.29 wind 1.0 10 < th dose independent rect. 9 18
272 152.32 humidity 60.0 1440 > th dose independent rect. 5 4
273 152.33 precipitation 0.1 10 < th dose independent rect. 3 23
274 152.33 precipitation 0.1 10 < th dose dependent rect. 3 23
275 152.35 humidity 60.0 90 < th dose independent rect. 17 16
276 152.36 radiation 40.0 90 > th dose independent rect. 14 19
281 152.40 humidity 60.0 90 < th dose dependent rect. 17 17
282 152.42 humidity 60.0 1440 > th dose independent rect. 20 13
284 152.42 wind 1.0 90 < th dose independent rect. 9 18
286 152.44 humidity 60.0 90 < th dose dependent rect. 18 15
296 152.50 wind 1.0 90 < th dose independent rect. 23 4
299 152.52 humidity 60.0 270 < th dose independent rect. 8 1
325 152.52 humidity 60.0 270 < th dose dependent rect. 8 1
397 152.70 wind 1.0 10 > th dose independent sin 2 NA
479 152.88 humidity 60.0 30 < th dose independent rect. 9 1
526 152.88 humidity 60.0 10 < th dose dependent rect. 9 1
636 152.89 wind 1.0 10 < th dose dependent rect. 9 1
641 152.89 wind 1.0 10 < th dose dependent rect. 9 13
646 152.91 humidity 90.0 30 > th dose independent rect. 24 3
658 152.95 wind 1.0 10 < th dose independent rect. 9 1
663 152.98 wind 1.0 10 > th dose independent rect. 3 23
669 153.01 wind 1.0 10 < th dose dependent rect. 9 7
688 153.04 humidity 50.0 720 > th dose dependent rect. 2 7
691 153.06 radiation 40.0 30 > th dose dependent rect. 9 1
719 153.09 humidity 90.0 720 < th dose independent rect. 3 3
741 153.10 wind 1.0 90 < th dose independent rect. 17 10
756 153.15 wind 1.0 10 < th dose independent rect. 9 13
815 153.26 wind 1.0 10 < th dose independent rect. 9 9
819 153.27 wind 1.0 10 < th dose independent rect. 9 7
832 153.28 humidity 60.0 1440 > th dose independent rect. 24 9
838 153.30 wind 1.0 10 < th dose independent sin 19 NA
840 153.31 humidity 90.0 720 < th dose independent rect. 2 5
841 153.32 temperature 10.0 1440 > th dose independent rect. 15 1
846 153.32 wind 1.0 10 < th dose independent rect. 2 8
849 153.32 temperature 10.0 1440 > th dose independent rect. 16 23
870 153.37 radiation 30.0 30 > th dose independent rect. 14 1
872 153.37 humidity 70.0 720 > th dose dependent rect. 2 5
879 153.40 wind 1.0 90 < th dose dependent rect. 9 18
881 153.41 wind 1.0 10 > th dose independent no NA NA
896 153.43 humidity 70.0 30 < th dose independent rect. 14 1
899 153.43 humidity 90.0 720 < th dose dependent rect. 4 2
901 153.44 radiation 20.0 30 > th dose dependent rect. 14 1
930 153.47 temperature 25.0 10 < th dose independent rect. 24 13
957 153.53 wind 5.0 30 > th dose independent rect. 14 1
966 153.54 humidity 90.0 30 < th dose dependent rect. 14 1
971 153.55 temperature 25.0 30 > th dose dependent rect. 14 1