Os05g0242100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os05g0242100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.21 | 0.421 | 3.13 | -0.074 | 0.139 | 0.412 | -0.0421 | -1.84 | -0.0134 | 6.41 | 59.04 | 138 | -- | -- |
| 85.81 | 0.431 | 3.13 | -0.0744 | 0.174 | 0.31 | 0.142 | -- | -0.0338 | 6.46 | 59.94 | 137 | -- | -- |
| 80.22 | 0.417 | 3.13 | -0.074 | 0.138 | 0.413 | -- | -1.83 | -0.0133 | 6.48 | 59.05 | 137 | -- | -- |
| 85.82 | 0.431 | 3.13 | -0.0689 | 0.161 | 0.291 | -- | -- | -0.0346 | 6.72 | 60 | 137 | -- | -- |
| 81.12 | 0.419 | 3.14 | -0.0681 | -- | 0.361 | -- | -1.89 | -0.0157 | -- | 59.04 | 137 | -- | -- |
| 87.91 | 0.44 | 3.13 | -0.048 | 0.111 | -- | -0.109 | -- | -0.0619 | 8.77 | -- | -- | -- | -- |
| 87.95 | 0.439 | 3.13 | -0.0518 | 0.111 | -- | -- | -- | -0.0621 | 8.65 | -- | -- | -- | -- |
| 86.87 | 0.436 | 3.13 | -0.0554 | -- | 0.222 | -- | -- | -0.0357 | -- | 60 | 137 | -- | -- |
| 85.95 | 0.432 | 3.12 | -- | 0.159 | 0.288 | -- | -- | -0.025 | 6.77 | 60 | 137 | -- | -- |
| 88.64 | 0.44 | 3.14 | -0.0515 | -- | -- | -- | -- | -0.0611 | -- | -- | -- | -- | -- |
| 88.02 | 0.439 | 3.13 | -- | 0.111 | -- | -- | -- | -0.0563 | 8.68 | -- | -- | -- | -- |
| 85.17 | 0.431 | 3.13 | -- | -- | 0.404 | -- | -- | -0.0288 | -- | 54.49 | 48 | -- | -- |
| 88.71 | 0.44 | 3.13 | -- | -- | -- | -- | -- | -0.0554 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.57 | humidity | 70 | 4320 | > th | dose independent | rect. | 21 | 6 |
| 6 | 71.77 | humidity | 70 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 7 | 71.77 | humidity | 70 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 15 | 71.92 | humidity | 70 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 25 | 71.92 | humidity | 70 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 40 | 72.54 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 47 | 74.30 | wind | 9 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 48 | 74.36 | radiation | 1 | 270 | < th | dose independent | rect. | 8 | 1 |
| 49 | 74.36 | radiation | 1 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 51 | 74.46 | atmosphere | 1010 | 270 | > th | dose dependent | rect. | 12 | 1 |
| 58 | 74.50 | atmosphere | 1010 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 162 | 75.29 | atmosphere | 1010 | 30 | > th | dose dependent | sin | 23 | NA |
| 554 | 76.35 | humidity | 50 | 30 | > th | dose independent | sin | 7 | NA |
| 560 | 76.70 | humidity | 60 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 568 | 76.71 | wind | 9 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 720 | 78.36 | wind | 9 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 731 | 78.72 | humidity | 70 | 4320 | < th | dose dependent | rect. | 19 | 14 |
| 744 | 78.89 | humidity | 50 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 783 | 79.22 | humidity | 60 | 270 | < th | dose independent | rect. | 10 | 1 |
| 792 | 79.40 | humidity | 60 | 90 | < th | dose dependent | rect. | 11 | 5 |
| 794 | 79.44 | humidity | 70 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 833 | 79.94 | humidity | 70 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 843 | 79.95 | humidity | 70 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 881 | 80.05 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 936 | 80.05 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 987 | 80.08 | atmosphere | 1010 | 10 | > th | dose independent | rect. | 11 | 1 |