Os05g0239200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os05g0239200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.74 | 0.344 | 10.8 | 2.47 | 0.28 | -0.922 | -0.46 | 2.84 | 0.524 | 22.5 | 25.58 | 1414 | -- | -- |
| 56.94 | 0.351 | 10.9 | 1.65 | 0.328 | -0.681 | -0.448 | -- | 0.282 | 22.7 | 25.24 | 1245 | -- | -- |
| 54.48 | 0.344 | 10.8 | 2.47 | 0.275 | -0.919 | -- | 2.8 | 0.515 | 21.8 | 25.7 | 1471 | -- | -- |
| 56.97 | 0.352 | 10.9 | 1.68 | 0.33 | -0.679 | -- | -- | 0.319 | 22.6 | 26.04 | 1240 | -- | -- |
| 59.13 | 0.358 | 10.8 | 2.46 | -- | -0.917 | -- | 2.84 | 0.519 | -- | 25.63 | 1503 | -- | -- |
| 74.35 | 0.404 | 10.9 | 1.46 | 0.245 | -- | -0.447 | -- | 0.275 | 22.1 | -- | -- | -- | -- |
| 75.05 | 0.406 | 10.9 | 1.48 | 0.254 | -- | -- | -- | 0.277 | 21.4 | -- | -- | -- | -- |
| 59.79 | 0.36 | 10.9 | 1.72 | -- | -0.646 | -- | -- | 0.444 | -- | 26.7 | 7296 | -- | -- |
| 127.09 | 0.525 | 11 | -- | 0.293 | -0.361 | -- | -- | 0.116 | 22.2 | 27.2 | 1186 | -- | -- |
| 78.82 | 0.415 | 10.9 | 1.48 | -- | -- | -- | -- | 0.277 | -- | -- | -- | -- | -- |
| 132.52 | 0.538 | 11 | -- | 0.257 | -- | -- | -- | 0.113 | 21.9 | -- | -- | -- | -- |
| 127.31 | 0.526 | 11 | -- | -- | -0.407 | -- | -- | 0.0882 | -- | 34 | 7192 | -- | -- |
| 136.46 | 0.545 | 11 | -- | -- | -- | -- | -- | 0.113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.65 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 61 | 52.33 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 203 | 53.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 205 | 53.29 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 212 | 53.32 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 220 | 53.34 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 256 | 53.50 | humidity | 70 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 278 | 53.59 | radiation | 1 | 1440 | < th | dose dependent | sin | 15 | NA |
| 342 | 53.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 343 | 53.85 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 352 | 53.89 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 17 |
| 353 | 53.90 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 358 | 53.93 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 360 | 53.93 | humidity | 60 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 367 | 53.96 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 391 | 54.09 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 408 | 54.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 12 |
| 419 | 54.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 5 |
| 426 | 54.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 8 |
| 439 | 54.27 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 442 | 54.27 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 501 | 54.39 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 18 |
| 513 | 54.41 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 518 | 54.43 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 553 | 54.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 9 |
| 565 | 54.51 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 609 | 54.61 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 638 | 54.75 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 663 | 54.82 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 754 | 55.02 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 762 | 55.03 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 763 | 55.04 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 767 | 55.05 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 793 | 55.08 | radiation | 40 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 800 | 55.09 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 813 | 55.11 | radiation | 40 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 827 | 55.14 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 847 | 55.16 | radiation | 40 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 887 | 55.23 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 912 | 55.27 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 921 | 55.30 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 20 |
| 930 | 55.31 | radiation | 1 | 1440 | < th | dose dependent | rect. | 21 | 22 |
| 931 | 55.31 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 938 | 55.32 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 939 | 55.32 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 942 | 55.33 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 945 | 55.33 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 16 |
| 959 | 55.34 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 19 |