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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0239100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.19 (0.034) R2 : 0.303
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2 (0.148) R2dE : 0.322 R2E : 0.299
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0965 (0.0755) R2dN8 : 0.00372 R2N8 : -0.0188
σ : 0.629
deviance : 182.53
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 29.9
memory length : 1151
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
171.98 0.616 4.23 -0.369 0.887 2.24 0.742 1.03 0.0403 16.3 30.26 357 -- --
172.8 0.612 4.21 -0.19 0.886 2.26 0.532 -- 0.0724 16.3 30.72 354 -- --
173.18 0.613 4.21 -0.283 0.866 2.23 -- 0.595 0.0688 16.5 30.06 376 -- --
173.46 0.613 4.21 -0.183 0.877 2.23 -- -- 0.0849 16.4 30.44 363 -- --
180.74 0.626 4.22 -0.386 -- 1.95 -- 1.1 0.0155 -- 29.56 1145 -- --
235.53 0.719 4.29 -0.744 0.292 -- 0.438 -- -0.347 13.9 -- -- -- --
236.24 0.72 4.29 -0.73 0.295 -- -- -- -0.344 14.2 -- -- -- --
181.96 0.628 4.2 -0.158 -- 1.93 -- -- 0.0643 -- 29.96 1145 -- --
174.25 0.615 4.2 -- 0.904 2.3 -- -- 0.114 16.4 30.42 363 -- --
241.43 0.726 4.29 -0.742 -- -- -- -- -0.351 -- -- -- -- --
250.28 0.74 4.27 -- 0.309 -- -- -- -0.263 14.3 -- -- -- --
182.53 0.629 4.19 -- -- 2 -- -- 0.0965 -- 29.9 1151 -- --
255.96 0.747 4.27 -- -- -- -- -- -0.269 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 166.02 temperature 30 270 < th dose dependent rect. 5 22
3 166.76 temperature 10 270 > th dose dependent rect. 10 23
10 168.50 temperature 25 270 < th dose dependent rect. 6 19
33 171.09 temperature 30 270 < th dose dependent rect. 17 22
84 173.57 temperature 30 10 < th dose dependent rect. 7 23
86 173.62 temperature 30 270 < th dose dependent no NA NA
122 174.82 temperature 30 10 < th dose dependent rect. 9 17
177 176.03 temperature 10 270 > th dose dependent no NA NA
178 176.07 temperature 30 10 < th dose dependent rect. 19 23
203 176.67 temperature 30 10 < th dose dependent rect. 19 19
220 177.11 temperature 15 270 > th dose dependent rect. 1 23
223 177.14 temperature 10 270 > th dose dependent rect. 23 23
226 177.16 temperature 10 720 > th dose dependent rect. 19 21
278 177.76 temperature 15 270 > th dose dependent rect. 21 23
290 178.03 temperature 25 270 < th dose dependent sin 20 NA
292 178.07 temperature 10 30 > th dose dependent no NA NA
335 178.48 temperature 30 30 < th dose dependent rect. 11 23
372 178.92 temperature 15 10 > th dose dependent rect. 11 23
402 179.28 temperature 10 720 > th dose dependent rect. 4 20
442 179.56 temperature 25 270 < th dose independent rect. 6 20
452 179.65 temperature 20 90 > th dose dependent rect. 13 19
486 179.92 temperature 25 270 < th dose independent rect. 7 18
532 180.24 temperature 30 720 < th dose dependent rect. 22 23
554 180.40 temperature 25 10 < th dose dependent rect. 4 22
571 180.50 temperature 20 10 > th dose dependent rect. 13 20
661 181.07 temperature 25 30 < th dose dependent rect. 21 23
674 181.12 temperature 30 1440 < th dose dependent rect. 23 15
682 181.15 temperature 25 30 < th dose dependent rect. 23 23
740 181.42 temperature 15 10 > th dose dependent rect. 13 23
741 181.43 temperature 25 1440 < th dose dependent rect. 4 8
795 181.60 temperature 15 10 > th dose dependent rect. 1 23
805 181.66 atmosphere 995 270 > th dose dependent rect. 5 22
842 181.82 temperature 10 1440 > th dose dependent rect. 23 14
909 182.08 temperature 30 1440 < th dose dependent sin 5 NA