Os05g0237700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Terpenoid cylases/protein prenyltransferase alpha-alpha toroid domain containing protein.
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Os05g0237700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Terpenoid cylases/protein prenyltransferase alpha-alpha toroid domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 589.55 | 1.14 | 5.34 | -2.73 | 0.287 | -1.57 | -1.66 | 0.00725 | 0.893 | 16.3 | 25.43 | 3593 | -- | -- |
| 589.54 | 1.13 | 5.34 | -2.74 | 0.29 | -1.57 | -1.66 | -- | 0.895 | 16.3 | 25.4 | 3574 | -- | -- |
| 597.06 | 1.14 | 5.34 | -2.73 | 0.291 | -1.55 | -- | 0.0813 | 0.906 | 16.3 | 25.26 | 3490 | -- | -- |
| 597.05 | 1.14 | 5.34 | -2.75 | 0.288 | -1.53 | -- | -- | 0.896 | 16.2 | 25.3 | 3490 | -- | -- |
| 601.28 | 1.14 | 5.34 | -2.73 | -- | -1.59 | -- | 0.131 | 0.889 | -- | 25.39 | 3621 | -- | -- |
| 659.28 | 1.2 | 5.35 | -3.2 | 0.379 | -- | -1.39 | -- | 0.839 | 15.6 | -- | -- | -- | -- |
| 664.77 | 1.21 | 5.35 | -3.22 | 0.373 | -- | -- | -- | 0.83 | 14.7 | -- | -- | -- | -- |
| 601.28 | 1.14 | 5.34 | -2.76 | -- | -1.58 | -- | -- | 0.878 | -- | 25.4 | 3624 | -- | -- |
| 629.54 | 1.17 | 5.07 | -- | 0.301 | -2.84 | -- | -- | 2.07 | 15 | 14.85 | 34398 | -- | -- |
| 672.87 | 1.21 | 5.35 | -3.24 | -- | -- | -- | -- | 0.821 | -- | -- | -- | -- | -- |
| 938.24 | 1.43 | 5.27 | -- | 0.437 | -- | -- | -- | 1.19 | 14.8 | -- | -- | -- | -- |
| 625.2 | 1.16 | 5.07 | -- | -- | -2.81 | -- | -- | 2.08 | -- | 15.07 | 47411 | -- | -- |
| 949.28 | 1.44 | 5.27 | -- | -- | -- | -- | -- | 1.18 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 577.49 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 9 |
| 3 | 578.37 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 11 |
| 5 | 579.15 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 12 |
| 8 | 579.87 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 6 |
| 11 | 580.41 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 14 | 580.61 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 8 |
| 28 | 581.54 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 8 |
| 35 | 581.85 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 13 |
| 37 | 581.95 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 15 |
| 83 | 583.87 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 117 | 585.09 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 4 |
| 129 | 585.29 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 154 | 585.65 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 6 |
| 155 | 585.71 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 164 | 585.97 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 3 |
| 176 | 586.12 | temperature | 25 | 4320 | > th | dose dependent | sin | 10 | NA |
| 201 | 586.52 | temperature | 25 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 203 | 586.56 | temperature | 25 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 204 | 586.57 | temperature | 25 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 206 | 586.60 | temperature | 25 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 227 | 586.97 | temperature | 25 | 4320 | > th | dose independent | sin | 9 | NA |
| 243 | 587.28 | temperature | 25 | 4320 | < th | dose independent | sin | 9 | NA |
| 256 | 587.55 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 259 | 587.59 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 274 | 587.86 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 287 | 588.05 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 5 |
| 339 | 588.87 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 340 | 588.87 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 393 | 589.51 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 5 |
| 418 | 589.75 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 421 | 589.77 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 549 | 590.92 | wind | 3 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 576 | 591.13 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 8 |
| 605 | 591.23 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 619 | 591.31 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 15 |
| 624 | 591.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 17 |
| 654 | 591.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 715 | 591.56 | temperature | 25 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 725 | 591.60 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 739 | 591.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 773 | 591.69 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 846 | 591.92 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 851 | 591.94 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 18 |
| 852 | 591.95 | temperature | 30 | 1440 | < th | dose independent | sin | 22 | NA |
| 878 | 592.01 | temperature | 30 | 1440 | > th | dose independent | sin | 22 | NA |
| 888 | 592.02 | wind | 5 | 43200 | > th | dose dependent | rect. | 4 | 10 |
| 895 | 592.05 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 18 |
| 919 | 592.10 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 18 |
| 925 | 592.12 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 934 | 592.14 | temperature | 25 | 4320 | < th | dose independent | rect. | 18 | 8 |