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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0237400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Viroid symptom modulation protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0265) R2 : 0.00241
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0586 (0.0558) R2dN8 : 0.00311 R2N8 : 0.00241
σ : 0.499
deviance : 114.5
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
103.63 0.478 3.02 0.302 0.122 4.38 0.586 15.4 -0.0214 13 995 6087 -- --
110.28 0.493 2.98 0.148 0.117 0.83 0.607 -- -0.0376 12.5 995 6087 -- --
104.72 0.477 3.05 0.446 0.125 6.97 -- 24.4 -0.00913 13.6 994.9 5646 -- --
110.05 0.489 2.98 0.17 0.108 0.552 -- -- -0.0111 12 997.8 6031 -- --
105.56 0.479 3.06 0.442 -- 8.11 -- 28.2 -0.0323 -- 994.9 6122 -- --
111.16 0.494 2.98 0.155 0.124 -- 0.617 -- -0.0403 12.8 -- -- -- --
112.73 0.497 2.98 0.179 0.126 -- -- -- -0.0365 13.7 -- -- -- --
110.79 0.49 2.98 0.167 -- 0.568 -- -- -0.0145 -- 997.6 5883 -- --
110.65 0.49 2.98 -- 0.122 0.549 -- -- -0.0299 13.7 997.9 5998 -- --
113.7 0.498 2.98 0.174 -- -- -- -- -0.0394 -- -- -- -- --
113.57 0.499 2.99 -- 0.123 -- -- -- -0.0565 13.6 -- -- -- --
111.5 0.492 2.98 -- -- 0.558 -- -- -0.0312 -- 997.9 5981 -- --
114.5 0.499 2.99 -- -- -- -- -- -0.0586 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 98.83 atmosphere 995.0 4320 > th dose independent rect. 8 5
6 99.41 atmosphere 995.0 4320 > th dose independent rect. 4 9
9 99.49 atmosphere 995.0 4320 < th dose dependent rect. 14 1
28 99.51 atmosphere 995.0 4320 < th dose independent rect. 14 1
123 100.40 atmosphere 995.0 4320 > th dose independent rect. 12 9
125 100.46 atmosphere 995.0 4320 > th dose independent rect. 12 5
128 100.54 atmosphere 995.0 4320 > th dose independent rect. 10 11
129 100.58 atmosphere 995.0 4320 > th dose independent rect. 10 7
143 100.67 radiation 1.0 4320 < th dose dependent rect. 23 1
145 100.70 atmosphere 995.0 4320 > th dose independent rect. 15 1
185 100.93 wind 1.0 10 < th dose independent rect. 15 7
186 100.94 wind 1.0 10 < th dose independent rect. 21 1
192 100.94 wind 1.0 10 < th dose dependent rect. 21 1
234 101.88 radiation 1.0 4320 < th dose dependent rect. 23 4
253 102.32 atmosphere 995.0 4320 > th dose independent rect. 19 18
282 102.76 wind 7.0 4320 > th dose independent rect. 6 1
283 102.78 wind 7.0 4320 > th dose dependent rect. 6 1
289 102.90 precipitation 0.1 4320 > th dose dependent rect. 20 1
294 103.24 radiation 1.0 4320 < th dose dependent rect. 1 1
299 103.73 radiation 1.0 4320 < th dose dependent rect. 19 8
338 105.15 atmosphere 995.0 4320 > th dose independent sin 7 NA
345 105.49 atmosphere 1000.0 10 < th dose independent rect. 10 2
365 105.64 atmosphere 995.0 4320 < th dose dependent sin 5 NA
366 105.71 wind 5.0 10 < th dose independent rect. 20 1
377 105.78 atmosphere 995.0 4320 < th dose independent sin 6 NA
381 105.89 wind 7.0 10 < th dose dependent rect. 20 1
382 105.93 precipitation 0.1 4320 > th dose independent rect. 8 1
383 105.93 precipitation 0.1 4320 > th dose dependent rect. 8 1
388 106.00 atmosphere 1010.0 30 < th dose dependent rect. 20 1
391 106.06 precipitation 0.1 4320 < th dose independent rect. 8 1
392 106.06 precipitation 0.1 4320 < th dose dependent rect. 8 1
403 106.12 temperature 20.0 10 > th dose independent rect. 20 1
405 106.14 atmosphere 1005.0 10 > th dose independent rect. 20 1
411 106.16 wind 1.0 10 > th dose independent rect. 20 1
413 106.16 temperature 10.0 10 > th dose independent rect. 20 1
415 106.16 temperature 30.0 10 < th dose independent rect. 20 1
416 106.16 humidity 50.0 10 > th dose independent rect. 20 1
419 106.16 atmosphere 995.0 10 > th dose independent rect. 20 1
420 106.16 atmosphere 1010.0 10 < th dose independent rect. 20 1
422 106.16 radiation 1.0 10 < th dose independent rect. 20 1
427 106.16 precipitation 0.1 10 < th dose independent rect. 20 1
428 106.16 temperature 10.0 10 > th dose independent rect. 21 23
431 106.16 radiation 1.0 10 < th dose dependent rect. 20 1
436 106.16 precipitation 0.1 10 < th dose dependent rect. 20 1
439 106.17 temperature 30.0 30 < th dose dependent rect. 20 1
441 106.20 temperature 10.0 10 > th dose dependent rect. 20 1
442 106.20 humidity 90.0 30 < th dose dependent rect. 20 1
456 106.23 precipitation 0.1 270 > th dose independent rect. 20 1
457 106.23 precipitation 0.1 270 > th dose dependent rect. 20 1
458 106.24 atmosphere 1000.0 10 < th dose independent rect. 5 8
467 106.30 humidity 90.0 10 < th dose independent rect. 20 1
470 106.34 atmosphere 995.0 10 > th dose dependent rect. 20 1
502 106.40 humidity 50.0 10 > th dose dependent rect. 20 1
532 106.64 atmosphere 1000.0 90 > th dose independent rect. 23 22
536 106.66 atmosphere 1000.0 10 > th dose independent rect. 4 17
542 106.69 humidity 90.0 720 < th dose independent rect. 3 2
543 106.69 wind 1.0 30 > th dose dependent rect. 20 1
550 106.74 radiation 10.0 1440 < th dose dependent rect. 21 1
554 106.75 temperature 10.0 1440 > th dose independent rect. 21 1
557 106.75 temperature 30.0 1440 < th dose independent rect. 21 1
561 106.75 humidity 50.0 1440 > th dose independent rect. 21 1
567 106.75 atmosphere 995.0 1440 > th dose independent rect. 21 1
568 106.75 radiation 1.0 1440 < th dose independent rect. 21 1
588 106.75 temperature 10.0 1440 > th dose independent rect. 22 23
607 106.83 radiation 40.0 14400 < th dose dependent rect. 21 1
617 106.88 precipitation 0.1 4320 > th dose independent rect. 20 1
632 106.96 atmosphere 1000.0 10 > th dose independent rect. 21 23
652 107.03 atmosphere 1000.0 10 < th dose independent rect. 24 13
654 107.05 precipitation 0.1 4320 < th dose independent rect. 20 1
656 107.05 precipitation 0.1 4320 < th dose dependent rect. 20 1
661 107.07 wind 9.0 10 < th dose independent rect. 21 23
694 107.19 atmosphere 1000.0 30 > th dose independent rect. 9 12
700 107.21 atmosphere 1000.0 30 > th dose independent rect. 3 9
704 107.22 atmosphere 1000.0 30 > th dose independent rect. 14 22
720 107.28 humidity 50.0 90 < th dose dependent rect. 12 2
724 107.29 atmosphere 1010.0 720 > th dose dependent rect. 4 2
734 107.34 atmosphere 1000.0 30 < th dose independent sin 2 NA
736 107.34 atmosphere 1000.0 90 > th dose independent rect. 6 13
750 107.38 atmosphere 1000.0 10 > th dose independent rect. 24 12
753 107.38 atmosphere 1000.0 10 > th dose independent rect. 24 21
756 107.39 humidity 90.0 1440 > th dose independent rect. 4 1
785 107.47 wind 7.0 4320 < th dose independent rect. 6 1
805 107.50 atmosphere 1000.0 90 > th dose independent sin 2 NA
809 107.51 atmosphere 1000.0 10 > th dose independent sin 2 NA
833 107.54 radiation 20.0 270 > th dose independent rect. 15 18
845 107.54 radiation 10.0 270 > th dose dependent rect. 15 18
876 107.59 atmosphere 1000.0 10 < th dose independent rect. 16 21
925 107.69 humidity 50.0 90 < th dose independent rect. 12 2
943 107.71 atmosphere 1000.0 30 < th dose independent rect. 11 20
969 107.74 humidity 70.0 720 > th dose independent rect. 23 10
994 107.77 atmosphere 1010.0 270 > th dose independent rect. 12 1