Os05g0237300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os05g0237300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.74 | 0.395 | 10.1 | -0.0705 | 1.11 | -0.0761 | 1.02 | -3.95 | -0.286 | 23 | 14.78 | 3805 | -- | -- |
| 84.12 | 0.43 | 9.97 | 0.873 | 1.07 | -0.17 | 0.817 | -- | -0.0106 | 22.8 | 14.78 | 3805 | -- | -- |
| 73.63 | 0.4 | 10.1 | -0.134 | 1.11 | -0.00359 | -- | -3.8 | -0.292 | 23 | 14.2 | 3074 | -- | -- |
| 86.21 | 0.432 | 10 | 0.526 | 1.06 | 0.319 | -- | -- | -0.187 | 23 | 8.217 | 14880 | -- | -- |
| 137.32 | 0.549 | 9.97 | 0.561 | -- | -0.965 | -- | -3.31 | -0.0184 | -- | 12.25 | 3078 | -- | -- |
| 84.4 | 0.431 | 9.97 | 0.84 | 1.1 | -- | 0.82 | -- | -0.0347 | 22.9 | -- | -- | -- | -- |
| 87.24 | 0.437 | 9.97 | 0.806 | 1.1 | -- | -- | -- | -0.0375 | 23 | -- | -- | -- | -- |
| 146.48 | 0.566 | 9.91 | 1.02 | -- | -1.03 | -- | -- | 0.109 | -- | 11.19 | 835 | -- | -- |
| 90.3 | 0.443 | 10 | -- | 1.09 | 0.604 | -- | -- | -0.308 | 23 | 5.95 | 47520 | -- | -- |
| 161.93 | 0.595 | 9.94 | 0.83 | -- | -- | -- | -- | -0.0295 | -- | -- | -- | -- | -- |
| 104.36 | 0.478 | 9.99 | -- | 1.1 | -- | -- | -- | -0.127 | 23 | -- | -- | -- | -- |
| 158.16 | 0.586 | 10 | -- | -- | 1.11 | -- | -- | -0.263 | -- | -3.635 | 850 | -- | -- |
| 180.11 | 0.626 | 9.97 | -- | -- | -- | -- | -- | -0.122 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.09 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 4 | 69.33 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 5 | 69.38 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 6 | 69.40 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 8 | 69.41 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 9 | 69.42 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 12 | 69.45 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 15 |
| 14 | 69.48 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 16 | 69.49 | temperature | 30 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 29 | 69.54 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 11 |
| 50 | 69.60 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 57 | 69.63 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 148 | 69.85 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 16 |
| 157 | 69.87 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 263 | 70.08 | temperature | 15 | 4320 | > th | dose dependent | sin | 13 | NA |
| 288 | 70.12 | temperature | 15 | 1440 | > th | dose independent | rect. | 3 | 16 |
| 291 | 70.13 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 324 | 70.18 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 6 |
| 329 | 70.18 | temperature | 30 | 4320 | < th | dose dependent | sin | 13 | NA |
| 354 | 70.22 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 6 |
| 446 | 70.35 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 504 | 70.45 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 618 | 70.57 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 650 | 70.61 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 841 | 70.82 | radiation | 20 | 10 | < th | dose dependent | rect. | 24 | 17 |