Os05g0237100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Type A-like cyclin.
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Os05g0237100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Type A-like cyclin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.47 | 0.397 | 8.72 | -1.28 | 1.05 | 0.738 | -0.49 | -0.0775 | -0.305 | 20.1 | 16.76 | 12338 | -- | -- |
| 71.47 | 0.394 | 8.72 | -1.23 | 1.05 | 0.707 | -0.515 | -- | -0.294 | 20.1 | 17.93 | 12354 | -- | -- |
| 72.11 | 0.396 | 8.72 | -1.27 | 1.05 | 0.654 | -- | -0.295 | -0.301 | 20.1 | 18.8 | 12380 | -- | -- |
| 72.18 | 0.396 | 8.71 | -1.22 | 1.05 | 0.712 | -- | -- | -0.297 | 20.1 | 17.93 | 12361 | -- | -- |
| 132.05 | 0.535 | 8.72 | -1.36 | -- | 0.794 | -- | -0.199 | -0.395 | -- | 18.64 | 13709 | -- | -- |
| 82.21 | 0.425 | 8.65 | -0.744 | 1.06 | -- | -0.445 | -- | -0.0021 | 20.2 | -- | -- | -- | -- |
| 82.81 | 0.426 | 8.65 | -0.731 | 1.06 | -- | -- | -- | -0.0025 | 20.2 | -- | -- | -- | -- |
| 132.12 | 0.535 | 8.7 | -1.3 | -- | 0.79 | -- | -- | -0.378 | -- | 18.99 | 13710 | -- | -- |
| 93.98 | 0.452 | 8.65 | -- | 1.06 | 0.239 | -- | -- | -0.012 | 20.2 | 27.8 | 8089 | -- | -- |
| 145.04 | 0.563 | 8.62 | -0.739 | -- | -- | -- | -- | -0.0145 | -- | -- | -- | -- | -- |
| 96.91 | 0.46 | 8.63 | -- | 1.07 | -- | -- | -- | 0.079 | 20.2 | -- | -- | -- | -- |
| 153.72 | 0.577 | 8.62 | -- | -- | 0.361 | -- | -- | -0.0201 | -- | 27.48 | 7949 | -- | -- |
| 159.45 | 0.589 | 8.6 | -- | -- | -- | -- | -- | 0.0675 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.90 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 2 | 70.12 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 6 | 70.44 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 7 | 70.67 | wind | 1.0 | 90 | > th | dose independent | rect. | 4 | 3 |
| 10 | 70.78 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 16 | 16 |
| 12 | 70.78 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 13 | 70.79 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 15 | 70.81 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 2 |
| 16 | 70.82 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 22 | 70.91 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 13 | 12 |
| 26 | 70.92 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 23 | 5 |
| 27 | 70.93 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 30 | 70.94 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 13 | 12 |
| 31 | 70.95 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 80 | 71.05 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 102 | 71.11 | temperature | 20.0 | 14400 | > th | dose independent | sin | 17 | NA |
| 105 | 71.11 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 113 | 71.12 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 127 | 71.13 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 132 | 71.14 | temperature | 20.0 | 14400 | < th | dose independent | sin | 17 | NA |
| 205 | 71.20 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 307 | 71.26 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 18 | NA |
| 347 | 71.28 | temperature | 15.0 | 14400 | > th | dose dependent | sin | 18 | NA |
| 452 | 71.32 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 453 | 71.32 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 458 | 71.32 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 459 | 71.32 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 727 | 71.41 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 732 | 71.41 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 21 | 6 |