Os05g0235300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os05g0235300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.5 | 0.233 | 11.9 | 0.365 | 0.491 | -0.43 | 0.205 | 0.163 | 0.267 | 20.3 | 1002 | 11257 | -- | -- |
| 24.51 | 0.231 | 11.9 | 0.355 | 0.491 | -0.4 | 0.203 | -- | 0.266 | 20.3 | 1003 | 11357 | -- | -- |
| 24.62 | 0.231 | 11.9 | 0.359 | 0.491 | -0.432 | -- | 0.174 | 0.264 | 20.3 | 1003 | 11369 | -- | -- |
| 24.63 | 0.231 | 11.9 | 0.352 | 0.491 | -0.401 | -- | -- | 0.267 | 20.3 | 1003 | 11391 | -- | -- |
| 37.96 | 0.287 | 11.9 | 0.371 | -- | -0.439 | -- | 0.25 | 0.258 | -- | 1003 | 11540 | -- | -- |
| 28.13 | 0.249 | 11.9 | 0.285 | 0.49 | -- | 0.197 | -- | 0.31 | 20.4 | -- | -- | -- | -- |
| 28.25 | 0.249 | 11.9 | 0.279 | 0.491 | -- | -- | -- | 0.31 | 20.3 | -- | -- | -- | -- |
| 37.98 | 0.287 | 11.9 | 0.347 | -- | -0.398 | -- | -- | 0.261 | -- | 1003 | 11475 | -- | -- |
| 27.7 | 0.245 | 12 | -- | 0.49 | -0.357 | -- | -- | 0.231 | 20.3 | 1004 | 10509 | -- | -- |
| 41.61 | 0.301 | 11.9 | 0.276 | -- | -- | -- | -- | 0.305 | -- | -- | -- | -- | -- |
| 30.3 | 0.257 | 11.9 | -- | 0.49 | -- | -- | -- | 0.279 | 20.4 | -- | -- | -- | -- |
| 41.03 | 0.298 | 11.9 | -- | -- | -0.357 | -- | -- | 0.227 | -- | 1004 | 10259 | -- | -- |
| 43.62 | 0.308 | 11.9 | -- | -- | -- | -- | -- | 0.274 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.91 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 7 |
| 2 | 23.94 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 11 | 23.94 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 102 | 24.05 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 110 | 24.08 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 4 |
| 130 | 24.12 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 163 | 24.17 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 193 | 24.26 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 225 | 24.35 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 246 | 24.53 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 4 | 12 |
| 247 | 24.56 | wind | 7.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 248 | 24.56 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 249 | 24.56 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 250 | 24.56 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 253 | 24.59 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 4 | 11 |
| 277 | 24.70 | wind | 7.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 296 | 24.76 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 298 | 24.77 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 300 | 24.80 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 3 | 12 |
| 315 | 24.85 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 318 | 24.86 | temperature | 25.0 | 90 | > th | dose independent | rect. | 9 | 10 |
| 322 | 24.87 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 353 | 24.99 | atmosphere | 995.0 | 14400 | < th | dose dependent | sin | 1 | NA |
| 355 | 25.00 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 5 | NA |
| 362 | 25.04 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 370 | 25.07 | atmosphere | 995.0 | 14400 | < th | dose independent | sin | 4 | NA |
| 373 | 25.07 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 374 | 25.08 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 381 | 25.09 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 382 | 25.09 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 413 | 25.12 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 423 | 25.12 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 14 | 10 |
| 459 | 25.14 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 463 | 25.14 | atmosphere | 995.0 | 14400 | < th | dose dependent | sin | 19 | NA |
| 470 | 25.15 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 472 | 25.15 | wind | 5.0 | 720 | < th | dose independent | rect. | 7 | 4 |
| 523 | 25.18 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 531 | 25.18 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 548 | 25.19 | wind | 9.0 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 580 | 25.21 | wind | 9.0 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 593 | 25.22 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 12 |
| 636 | 25.24 | atmosphere | 1005.0 | 14400 | < th | dose dependent | sin | 7 | NA |
| 660 | 25.25 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 663 | 25.25 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 20 | 8 |
| 678 | 25.26 | humidity | 90.0 | 30 | < th | dose independent | rect. | 19 | 14 |
| 713 | 25.27 | wind | 9.0 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 745 | 25.28 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 9 | 2 |
| 754 | 25.28 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 17 | 12 |
| 775 | 25.28 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 22 |
| 794 | 25.29 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 11 | 20 |
| 803 | 25.29 | atmosphere | 1000.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 836 | 25.30 | atmosphere | 995.0 | 14400 | > th | dose independent | no | NA | NA |
| 848 | 25.30 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 11 | 18 |
| 868 | 25.30 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 869 | 25.30 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 876 | 25.30 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 883 | 25.30 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 905 | 25.30 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 17 | 18 |