Os05g0234700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, TTF-type domain containing protein.
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Os05g0234700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, TTF-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113.25 | 0.5 | 5.37 | 1.23 | 0.858 | -1.23 | -0.46 | -2.49 | 2.1 | 16.7 | 31.02 | 91 | -- | -- |
| 118.64 | 0.507 | 5.41 | 0.832 | 0.891 | -1.21 | 0.364 | -- | 2.02 | 16.4 | 31.72 | 121 | -- | -- |
| 113.67 | 0.497 | 5.37 | 1.18 | 0.858 | -1.21 | -- | -2.16 | 2.09 | 16.6 | 30.8 | 107 | -- | -- |
| 118.87 | 0.508 | 5.41 | 0.844 | 0.867 | -1.24 | -- | -- | 2.01 | 16.5 | 31.82 | 111 | -- | -- |
| 141.69 | 0.554 | 5.39 | 1.01 | -- | -1.99 | -- | -2.43 | 1.96 | -- | 31.4 | 135 | -- | -- |
| 136.07 | 0.547 | 5.37 | 1.11 | 1.24 | -- | 0.64 | -- | 2.21 | 16.1 | -- | -- | -- | -- |
| 137.2 | 0.549 | 5.37 | 1.12 | 1.25 | -- | -- | -- | 2.21 | 16.1 | -- | -- | -- | -- |
| 148.11 | 0.567 | 5.42 | 0.69 | -- | -2.17 | -- | -- | 1.87 | -- | 32.9 | 143 | -- | -- |
| 135.07 | 0.541 | 5.44 | -- | 0.741 | -1.61 | -- | -- | 1.86 | 16.8 | 31.46 | 112 | -- | -- |
| 221.73 | 0.696 | 5.36 | 1.07 | -- | -- | -- | -- | 2.18 | -- | -- | -- | -- | -- |
| 170.01 | 0.61 | 5.4 | -- | 1.23 | -- | -- | -- | 2.09 | 16.2 | -- | -- | -- | -- |
| 157.08 | 0.584 | 5.45 | -- | -- | -2.25 | -- | -- | 1.77 | -- | 31.99 | 154 | -- | -- |
| 251.67 | 0.74 | 5.39 | -- | -- | -- | -- | -- | 2.06 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.96 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 2 | 107.24 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 19 | 108.92 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 84 | 111.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 86 | 111.40 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 93 | 111.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 21 |
| 112 | 112.32 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 121 | 112.49 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 147 | 113.14 | temperature | 20 | 90 | > th | dose dependent | sin | 6 | NA |
| 153 | 113.21 | temperature | 20 | 90 | > th | dose dependent | rect. | 16 | 23 |
| 161 | 113.33 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 167 | 113.42 | temperature | 25 | 270 | > th | dose independent | rect. | 21 | 15 |
| 175 | 113.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 179 | 113.51 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 188 | 113.60 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 189 | 113.61 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 199 | 113.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 205 | 113.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 236 | 114.07 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 238 | 114.09 | temperature | 25 | 270 | < th | dose independent | sin | 8 | NA |
| 241 | 114.11 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 243 | 114.13 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 244 | 114.14 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 264 | 114.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 281 | 114.47 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 301 | 114.66 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 313 | 114.75 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 19 |
| 347 | 114.95 | temperature | 25 | 270 | > th | dose independent | rect. | 21 | 21 |
| 359 | 115.04 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 22 |
| 401 | 115.30 | temperature | 25 | 270 | > th | dose independent | sin | 7 | NA |
| 432 | 115.45 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 22 |
| 440 | 115.48 | temperature | 25 | 270 | < th | dose independent | rect. | 21 | 15 |
| 456 | 115.54 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 20 |
| 485 | 115.67 | temperature | 25 | 270 | > th | dose independent | rect. | 16 | 23 |
| 505 | 115.76 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 515 | 115.80 | temperature | 25 | 270 | < th | dose independent | rect. | 21 | 23 |
| 546 | 115.91 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 23 |
| 579 | 116.00 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 589 | 116.03 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 667 | 116.34 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 701 | 116.45 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 774 | 116.74 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 827 | 116.94 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 12 |
| 833 | 116.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 850 | 117.03 | temperature | 30 | 90 | < th | dose dependent | sin | 8 | NA |
| 851 | 117.04 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 16 |
| 923 | 117.35 | temperature | 15 | 720 | > th | dose dependent | rect. | 7 | 3 |
| 962 | 117.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 14 |