Os05g0231900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peroxidase 29 precursor (EC 1.11.1.7) (Atperox P29) (ATP40).
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Os05g0231900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peroxidase 29 precursor (EC 1.11.1.7) (Atperox P29) (ATP40).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 273.15 | 0.777 | 3.74 | -0.149 | 6.42 | 7.04 | -15.4 | -18.1 | -0.343 | 18.4 | 0.7159 | 751 | 4.28 | -- |
| 327.56 | 0.849 | 3.66 | -0.446 | 0.749 | 0.123 | -1.96 | -- | -0.579 | 13.6 | 0.7159 | 751 | 4.28 | -- |
| 288.69 | 0.791 | 3.74 | -0.15 | 2.74 | 3.85 | -- | -3.63 | -0.456 | 19.9 | 0.05988 | 873 | 1.46 | -- |
| 290.66 | 0.794 | 3.74 | -0.119 | 3.36 | 4.71 | -- | -- | -0.444 | 19.9 | 0.2292 | 801 | 0.0293 | -- |
| 356.92 | 0.885 | 3.69 | -0.551 | -- | -0.486 | -- | 1.07 | -0.643 | -- | 0.05988 | 873 | 1.46 | -- |
| 327.83 | 0.849 | 3.67 | -0.452 | 0.628 | -- | -1.96 | -- | -0.582 | 13.6 | -- | -- | -- | -- |
| 342.57 | 0.867 | 3.67 | -0.514 | 0.641 | -- | -- | -- | -0.591 | 14.2 | -- | -- | -- | -- |
| 343.45 | 0.863 | 3.56 | 0.611 | -- | 3.26 | -- | -- | -0.163 | -- | 0.2028 | 1379 | 0.53 | -- |
| 289.49 | 0.792 | 3.74 | -- | 4.01 | 5.62 | -- | -- | -0.374 | 20.1 | 0.2037 | 804 | 0.0417 | -- |
| 367.05 | 0.895 | 3.68 | -0.541 | -- | -- | -- | -- | -0.607 | -- | -- | -- | -- | -- |
| 349.54 | 0.875 | 3.66 | -- | 0.65 | -- | -- | -- | -0.534 | 14.2 | -- | -- | -- | -- |
| 327.21 | 0.842 | 3.63 | -- | -- | 2.2 | -- | -- | -0.347 | -- | 5.424e-08 | 1372 | 1.45 | -- |
| 374.77 | 0.904 | 3.67 | -- | -- | -- | -- | -- | -0.547 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 275.57 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 4 | 7 |
| 5 | 277.26 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 18 | 17 |
| 7 | 277.50 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 18 | 18 |
| 9 | 277.66 | radiation | 1.0 | 720 | < th | dose dependent | sin | 10 | NA |
| 23 | 280.30 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 12 | 10 |
| 33 | 280.53 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 34 | 280.58 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 19 | 3 |
| 86 | 281.33 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 127 | 282.31 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 136 | 282.45 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 149 | 282.72 | temperature | 15.0 | 4320 | < th | dose dependent | sin | 21 | NA |
| 158 | 282.92 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 4 | 8 |
| 166 | 283.07 | temperature | 15.0 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 226 | 285.02 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 246 | 285.42 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 253 | 285.54 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 1 | 2 |
| 254 | 285.54 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 1 | 2 |
| 256 | 285.56 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 20 | 20 |
| 257 | 285.60 | temperature | 15.0 | 4320 | < th | dose independent | rect. | 12 | 9 |
| 263 | 285.73 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 267 | 285.79 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 15 | 6 |
| 273 | 285.82 | temperature | 15.0 | 4320 | < th | dose independent | rect. | 12 | 7 |
| 290 | 286.03 | radiation | 1.0 | 720 | < th | dose independent | rect. | 4 | 8 |
| 327 | 286.42 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 16 | 2 |
| 328 | 286.43 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 14 | 3 |
| 344 | 286.63 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 351 | 286.70 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 1 | 11 |
| 357 | 286.75 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 6 | 17 |
| 365 | 286.81 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 23 | 13 |
| 373 | 286.90 | radiation | 1.0 | 720 | < th | dose independent | rect. | 18 | 17 |
| 380 | 286.96 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 12 | 10 |
| 410 | 287.34 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 425 | 287.44 | temperature | 15.0 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 431 | 287.47 | humidity | 50.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 448 | 287.57 | humidity | 90.0 | 720 | > th | dose independent | rect. | 4 | 19 |
| 480 | 287.75 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 485 | 287.78 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 2 | 10 |
| 488 | 287.80 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 492 | 287.83 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 506 | 287.93 | temperature | 15.0 | 4320 | < th | dose independent | sin | 20 | NA |
| 507 | 287.93 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 12 | 2 |
| 514 | 287.96 | radiation | 1.0 | 720 | < th | dose independent | sin | 10 | NA |
| 530 | 288.09 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 11 | 2 |
| 544 | 288.19 | humidity | 80.0 | 720 | > th | dose independent | rect. | 5 | 7 |
| 615 | 288.66 | radiation | 1.0 | 720 | > th | dose independent | rect. | 18 | 19 |
| 622 | 288.70 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 7 | 16 |
| 626 | 288.72 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 23 | 12 |
| 633 | 288.76 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 641 | 288.80 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 651 | 288.83 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 652 | 288.83 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 2 | 10 |
| 670 | 288.94 | temperature | 15.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 688 | 288.99 | temperature | 15.0 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 689 | 288.99 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 21 | 16 |
| 716 | 289.06 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 22 | 14 |
| 718 | 289.08 | temperature | 15.0 | 4320 | > th | dose independent | sin | 20 | NA |
| 774 | 289.22 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 778 | 289.24 | radiation | 1.0 | 720 | > th | dose independent | sin | 7 | NA |
| 783 | 289.24 | humidity | 90.0 | 720 | > th | dose independent | rect. | 18 | 18 |
| 812 | 289.36 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 6 | 11 |
| 848 | 289.47 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 16 | 22 |
| 895 | 289.68 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 908 | 289.74 | humidity | 80.0 | 270 | > th | dose independent | rect. | 21 | 16 |
| 920 | 289.83 | humidity | 90.0 | 720 | < th | dose dependent | sin | 7 | NA |
| 958 | 289.92 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 970 | 289.96 | radiation | 1.0 | 720 | > th | dose independent | rect. | 18 | 17 |
| 981 | 290.00 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 985 | 290.02 | radiation | 1.0 | 720 | > th | dose independent | rect. | 5 | 8 |