Os05g0230900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glyoxalase I.
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Os05g0230900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glyoxalase I.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.41 | 0.313 | 10.4 | 0.742 | 0.322 | 1.23 | 0.352 | 0.267 | -0.196 | 20.1 | 21.16 | 14 | -- | -- |
| 44.4 | 0.31 | 10.4 | 0.703 | 0.323 | 1.24 | 0.32 | -- | -0.205 | 20.1 | 21.56 | 10 | -- | -- |
| 44.7 | 0.311 | 10.4 | 0.722 | 0.327 | 1.23 | -- | 0.235 | -0.198 | 20.1 | 21.43 | 10 | -- | -- |
| 44.7 | 0.311 | 10.4 | 0.693 | 0.322 | 1.24 | -- | -- | -0.205 | 20.1 | 21.6 | 10 | -- | -- |
| 46.89 | 0.319 | 10.4 | 0.707 | -- | 1.26 | -- | 0.182 | -0.197 | -- | 21.58 | 155 | -- | -- |
| 67.95 | 0.386 | 10.4 | 0.946 | 0.601 | -- | 0.57 | -- | -0.000622 | 16.7 | -- | -- | -- | -- |
| 68.79 | 0.388 | 10.4 | 0.949 | 0.604 | -- | -- | -- | 0.00232 | 16.7 | -- | -- | -- | -- |
| 46.9 | 0.319 | 10.4 | 0.672 | -- | 1.27 | -- | -- | -0.206 | -- | 21.6 | 156 | -- | -- |
| 56.38 | 0.35 | 10.4 | -- | 0.316 | 1.47 | -- | -- | -0.316 | 21 | 21.2 | 13 | -- | -- |
| 88.16 | 0.439 | 10.4 | 0.926 | -- | -- | -- | -- | -0.0135 | -- | -- | -- | -- | -- |
| 92.5 | 0.45 | 10.4 | -- | 0.587 | -- | -- | -- | -0.103 | 16.7 | -- | -- | -- | -- |
| 57.63 | 0.354 | 10.4 | -- | -- | 1.55 | -- | -- | -0.319 | -- | 18 | 216 | -- | -- |
| 110.76 | 0.491 | 10.4 | -- | -- | -- | -- | -- | -0.116 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.63 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 2 | 41.93 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 3 | 42.29 | temperature | 20 | 270 | > th | dose dependent | sin | 5 | NA |
| 4 | 42.34 | temperature | 10 | 270 | > th | dose dependent | sin | 4 | NA |
| 9 | 42.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 25 | 43.48 | temperature | 10 | 90 | > th | dose dependent | sin | 1 | NA |
| 34 | 43.73 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 18 |
| 56 | 44.27 | temperature | 25 | 270 | > th | dose independent | rect. | 20 | 22 |
| 61 | 44.35 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 86 | 44.69 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 92 | 44.79 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 19 |
| 111 | 44.92 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 122 | 45.11 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 23 |
| 134 | 45.23 | temperature | 25 | 270 | < th | dose independent | rect. | 21 | 23 |
| 143 | 45.33 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 148 | 45.38 | temperature | 20 | 90 | > th | dose dependent | rect. | 22 | 23 |
| 170 | 45.55 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 171 | 45.56 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 182 | 45.64 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 195 | 45.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 212 | 45.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 226 | 46.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 230 | 46.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 232 | 46.06 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 13 |
| 240 | 46.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 255 | 46.27 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 23 |
| 262 | 46.30 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 16 |
| 269 | 46.34 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 280 | 46.39 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 317 | 46.55 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 346 | 46.64 | temperature | 25 | 270 | > th | dose independent | rect. | 3 | 23 |
| 363 | 46.69 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 379 | 46.77 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 415 | 46.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 442 | 47.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 444 | 47.05 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 23 |
| 549 | 47.43 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 23 |
| 572 | 47.51 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 23 |
| 644 | 47.77 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 685 | 47.87 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 728 | 47.98 | temperature | 25 | 270 | > th | dose independent | sin | 5 | NA |
| 744 | 48.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 761 | 48.05 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 785 | 48.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 859 | 48.28 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 23 |
| 939 | 48.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 953 | 48.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |