Os05g0230700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Auxin-responsive protein (Aux/IAA) (Fragment).
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Os05g0230700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Auxin-responsive protein (Aux/IAA) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.56 | 0.317 | 14.2 | -1.24 | 0.546 | 1.65 | 0.858 | -3.94 | 0.25 | 1.97 | 21.49 | 954 | -- | -- |
| 55 | 0.345 | 14.1 | -0.381 | 0.747 | 1.41 | 0.443 | -- | 0.477 | 1.28 | 18.32 | 2019 | -- | -- |
| 48.11 | 0.323 | 14.2 | -1.19 | 0.551 | 1.58 | -- | -3.55 | 0.264 | 1.52 | 21.65 | 997 | -- | -- |
| 55.65 | 0.347 | 14.1 | -0.418 | 0.669 | 1.43 | -- | -- | 0.481 | 1.02 | 17.5 | 2255 | -- | -- |
| 64.15 | 0.373 | 14.2 | -1.3 | -- | 1.82 | -- | -3.79 | 0.217 | -- | 21.83 | 1018 | -- | -- |
| 101.37 | 0.472 | 14 | 0.146 | 0.833 | -- | 0.397 | -- | 0.788 | 0.585 | -- | -- | -- | -- |
| 102.03 | 0.473 | 14 | 0.132 | 0.832 | -- | -- | -- | 0.787 | 0.509 | -- | -- | -- | -- |
| 72.44 | 0.396 | 14.1 | -0.381 | -- | 1.66 | -- | -- | 0.449 | -- | 19.32 | 1009 | -- | -- |
| 58.3 | 0.356 | 14.1 | -- | 0.734 | 1.38 | -- | -- | 0.545 | 0.318 | 16.4 | 1357 | -- | -- |
| 145.49 | 0.564 | 14 | 0.161 | -- | -- | -- | -- | 0.801 | -- | -- | -- | -- | -- |
| 102.49 | 0.474 | 14 | -- | 0.834 | -- | -- | -- | 0.772 | 0.517 | -- | -- | -- | -- |
| 75.52 | 0.405 | 14.1 | -- | -- | 1.5 | -- | -- | 0.527 | -- | 20.5 | 1008 | -- | -- |
| 146.17 | 0.564 | 14 | -- | -- | -- | -- | -- | 0.783 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.54 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 21 |
| 25 | 48.39 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 28 | 48.49 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 37 | 48.61 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 39 | 48.62 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 45 | 48.69 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 78 | 49.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 20 |
| 185 | 49.65 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 239 | 49.95 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 4 |
| 312 | 50.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 9 |
| 333 | 50.47 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 18 |
| 347 | 50.55 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 18 |
| 485 | 51.50 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 19 |
| 558 | 51.84 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 2 |
| 577 | 51.94 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 10 |
| 618 | 52.03 | temperature | 25 | 4320 | > th | dose dependent | sin | 0 | NA |
| 675 | 52.12 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 691 | 52.14 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 3 |
| 759 | 52.23 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 932 | 52.49 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 7 |
| 937 | 52.50 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 8 |
| 952 | 52.53 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 985 | 52.57 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 6 |