FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0229300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.52 (0.0321) R2 : 0.0574
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.356 (0.0676) R2dN8 : 0.0741 R2N8 : 0.0574
σ : 0.605
deviance : 167.73
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
134.65 0.545 3.45 -0.238 0.347 -0.309 -0.4 3.9 -0.351 19 9.99 4496 -- --
153.1 0.576 3.53 -0.304 0.287 -0.338 -0.54 -- -0.335 18.8 9.846 3863 -- --
135.02 0.541 3.45 -0.23 0.348 -0.311 -- 3.9 -0.35 19 9.99 4507 -- --
151.25 0.573 3.54 -0.181 0.235 -0.653 -- -- -0.357 18.6 9.989 5190 -- --
139.74 0.551 3.45 -0.227 -- -0.372 -- 3.93 -0.327 -- 9.983 4921 -- --
156.37 0.586 3.54 -0.409 0.35 -- -0.481 -- -0.393 18.2 -- -- -- --
156.87 0.587 3.54 -0.405 0.349 -- -- -- -0.395 18.6 -- -- -- --
152.8 0.576 3.54 -0.121 -- -0.838 -- -- -0.38 -- 9.957 5135 -- --
152.04 0.574 3.54 -- 0.233 -0.66 -- -- -0.357 18.2 9.99 5201 -- --
163.22 0.597 3.53 -0.413 -- -- -- -- -0.402 -- -- -- -- --
161.19 0.594 3.53 -- 0.355 -- -- -- -0.35 18.5 -- -- -- --
152.45 0.575 3.54 -- -- -0.981 -- -- -0.458 -- 9.94 5169 -- --
167.73 0.605 3.52 -- -- -- -- -- -0.356 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 126.99 wind 7.0 43200 > th dose independent rect. 5 3
2 127.59 wind 7.0 43200 < th dose independent rect. 5 3
3 127.59 wind 7.0 43200 > th dose dependent rect. 5 3
4 127.59 wind 9.0 43200 > th dose dependent rect. 22 3
5 127.66 wind 7.0 43200 > th dose independent rect. 7 1
8 128.19 wind 7.0 43200 < th dose independent rect. 7 1
10 128.25 radiation 40.0 4320 < th dose independent rect. 17 16
13 128.35 radiation 40.0 4320 < th dose independent rect. 24 9
20 128.43 radiation 40.0 4320 < th dose independent rect. 4 5
24 128.47 radiation 40.0 4320 < th dose independent rect. 6 3
31 128.87 wind 9.0 43200 > th dose independent rect. 9 6
33 129.16 wind 9.0 43200 < th dose independent rect. 9 6
39 130.01 wind 7.0 43200 > th dose dependent rect. 10 4
42 130.10 wind 7.0 43200 > th dose dependent rect. 9 6
53 130.62 wind 9.0 43200 < th dose independent rect. 5 10
54 130.64 wind 7.0 43200 > th dose dependent rect. 24 1
58 130.78 radiation 30.0 4320 > th dose dependent rect. 16 17
62 130.88 wind 9.0 43200 > th dose independent rect. 5 10
63 130.88 radiation 40.0 43200 < th dose independent rect. 18 14
64 130.88 radiation 30.0 43200 > th dose dependent rect. 7 1
79 130.90 radiation 1.0 43200 > th dose independent rect. 10 1
82 130.92 wind 7.0 43200 > th dose independent rect. 24 1
84 130.92 radiation 30.0 4320 > th dose dependent rect. 7 2
100 130.94 radiation 40.0 43200 < th dose independent rect. 20 12
102 130.95 radiation 1.0 43200 < th dose independent rect. 10 1
103 130.95 radiation 1.0 43200 < th dose dependent rect. 10 1
106 130.98 radiation 40.0 43200 < th dose independent rect. 22 10
111 131.02 precipitation 0.1 43200 < th dose independent rect. 6 1
113 131.02 precipitation 0.1 43200 < th dose dependent rect. 6 1
117 131.06 wind 7.0 43200 > th dose independent rect. 10 2
120 131.07 radiation 40.0 43200 < th dose independent rect. 2 6
123 131.11 wind 9.0 43200 > th dose independent sin 23 NA
124 131.11 wind 9.0 43200 > th dose independent rect. 8 12
126 131.11 wind 9.0 43200 > th dose dependent rect. 18 15
127 131.13 radiation 40.0 43200 < th dose independent rect. 6 2
136 131.16 wind 9.0 43200 < th dose independent rect. 24 15
138 131.17 wind 7.0 43200 > th dose dependent rect. 5 10
140 131.18 wind 9.0 43200 < th dose independent rect. 18 21
141 131.19 wind 9.0 43200 < th dose independent sin 0 NA
142 131.19 precipitation 0.1 43200 > th dose independent rect. 6 1
144 131.19 precipitation 0.1 43200 > th dose dependent rect. 6 1
147 131.22 wind 9.0 43200 > th dose independent rect. 18 21
155 131.27 humidity 90.0 14400 < th dose independent rect. 24 1
159 131.30 wind 9.0 43200 > th dose dependent rect. 18 17
160 131.31 radiation 20.0 43200 < th dose independent rect. 18 12
161 131.31 wind 9.0 43200 < th dose independent rect. 7 13
164 131.32 wind 9.0 43200 < th dose independent rect. 5 15
169 131.34 wind 7.0 43200 < th dose independent rect. 10 2
172 131.34 wind 9.0 43200 > th dose independent rect. 5 15
173 131.34 wind 9.0 43200 > th dose dependent rect. 22 10
180 131.40 wind 9.0 43200 > th dose independent rect. 24 15
188 131.43 temperature 15.0 43200 < th dose dependent rect. 3 1
199 131.51 wind 9.0 43200 < th dose independent rect. 22 17
210 131.55 wind 9.0 43200 > th dose independent rect. 8 17
222 131.58 wind 9.0 43200 > th dose independent rect. 18 16
247 131.64 wind 7.0 43200 > th dose dependent rect. 9 1
262 131.67 wind 7.0 43200 > th dose dependent rect. 24 10
263 131.67 wind 7.0 43200 > th dose dependent rect. 24 15
277 131.71 wind 9.0 43200 > th dose independent rect. 22 17
280 131.73 wind 9.0 43200 < th dose independent rect. 24 11
283 131.73 wind 7.0 43200 > th dose dependent sin 0 NA
285 131.74 wind 7.0 43200 < th dose independent rect. 24 1
313 131.79 wind 9.0 43200 < th dose independent rect. 24 20
320 131.80 wind 9.0 43200 < th dose independent rect. 8 17
342 131.83 wind 9.0 43200 > th dose independent rect. 24 20
352 131.87 wind 9.0 43200 < th dose independent rect. 4 7
354 131.87 radiation 30.0 14400 > th dose independent rect. 16 16
365 131.88 humidity 90.0 43200 > th dose dependent rect. 5 2
373 131.89 wind 9.0 43200 < th dose independent rect. 5 20
380 131.90 temperature 25.0 1440 < th dose dependent rect. 2 1
403 131.93 wind 7.0 43200 > th dose dependent rect. 7 13
405 131.94 radiation 10.0 4320 < th dose independent rect. 16 14
410 131.94 wind 7.0 43200 > th dose dependent rect. 5 15
462 131.99 wind 9.0 43200 > th dose independent rect. 24 11
464 131.99 temperature 15.0 1440 > th dose dependent rect. 2 1
479 132.01 wind 9.0 43200 > th dose dependent sin 9 NA
507 132.05 wind 9.0 43200 > th dose independent rect. 9 23
565 132.12 wind 9.0 43200 > th dose independent rect. 2 9
588 132.16 atmosphere 1015.0 43200 < th dose independent rect. 19 1
618 132.19 wind 7.0 43200 > th dose dependent rect. 18 21
627 132.20 radiation 1.0 43200 < th dose dependent rect. 8 1
632 132.21 radiation 1.0 43200 > th dose independent rect. 8 1
633 132.21 radiation 1.0 43200 < th dose independent rect. 8 1
660 132.24 wind 9.0 43200 < th dose independent rect. 10 23
749 132.32 radiation 30.0 14400 > th dose independent rect. 7 1
775 132.33 radiation 1.0 43200 < th dose dependent rect. 7 4
781 132.33 wind 9.0 43200 > th dose dependent rect. 11 21
794 132.35 wind 9.0 43200 < th dose independent rect. 18 17
803 132.36 radiation 10.0 4320 < th dose independent rect. 16 2
815 132.38 temperature 20.0 4320 < th dose independent rect. 22 1
824 132.38 temperature 15.0 43200 < th dose dependent sin 5 NA
835 132.39 wind 7.0 43200 > th dose dependent rect. 24 20
836 132.40 wind 9.0 43200 > th dose independent no NA NA
837 132.40 wind 9.0 43200 < th dose independent no NA NA
843 132.40 humidity 90.0 43200 > th dose dependent rect. 4 8
882 132.44 radiation 10.0 4320 < th dose independent rect. 16 5
887 132.44 wind 9.0 43200 < th dose independent rect. 13 23
897 132.45 radiation 10.0 43200 > th dose dependent rect. 5 1
906 132.45 radiation 30.0 43200 < th dose dependent rect. 21 8
917 132.46 radiation 10.0 4320 < th dose independent rect. 16 11
924 132.46 wind 7.0 43200 > th dose dependent rect. 5 20
926 132.47 radiation 1.0 43200 > th dose independent rect. 7 4
928 132.47 radiation 1.0 43200 < th dose independent rect. 7 4
944 132.48 radiation 40.0 43200 > th dose dependent rect. 9 1
981 132.51 radiation 40.0 43200 > th dose dependent rect. 11 1
990 132.52 wind 9.0 43200 > th dose independent rect. 13 23