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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0228900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0456) R2 : 0.000955
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0633 (0.0959) R2dN8 : 0.00123 R2N8 : 0.000955
σ : 0.858
deviance : 337.97
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
314.68 0.833 2.93 0.202 0.209 -0.879 0.959 -1.46 0.0413 16.1 20.1 272 -- --
320.28 0.834 2.91 0.424 0.229 -0.744 0.306 -- 0.067 15.3 20.15 235 -- --
316.57 0.829 2.92 0.285 0.223 -0.857 -- -1.11 0.0573 14.5 20.1 250 -- --
320.26 0.833 2.89 0.444 0.208 -0.718 -- -- 0.0921 14.4 20.19 238 -- --
319.24 0.832 2.92 0.254 -- -0.794 -- -1.12 0.0407 -- 20.06 270 -- --
336.08 0.859 2.92 0.202 0.0946 -- 0.265 -- -0.0398 14.4 -- -- -- --
336.27 0.859 2.92 0.208 0.0983 -- -- -- -0.0387 13.1 -- -- -- --
322.76 0.837 2.9 0.407 -- -0.653 -- -- 0.0758 -- 20.13 238 -- --
324.83 0.839 2.9 -- 0.188 -0.611 -- -- 0.0289 14.1 20.2 235 -- --
336.87 0.858 2.92 0.205 -- -- -- -- -0.0406 -- -- -- -- --
337.41 0.859 2.93 -- 0.0948 -- -- -- -0.0619 13 -- -- -- --
326.82 0.842 2.91 -- -- -0.56 -- -- 0.0172 -- 20.11 238 -- --
337.97 0.858 2.93 -- -- -- -- -- -0.0633 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 307.50 temperature 20.0 30 > th dose independent rect. 14 22
2 309.11 radiation 30.0 30 > th dose independent rect. 12 2
4 310.56 atmosphere 1005.0 90 > th dose independent rect. 12 1
7 311.10 atmosphere 995.0 90 > th dose dependent rect. 12 1
8 311.18 temperature 20.0 270 < th dose independent rect. 24 22
9 311.19 radiation 1.0 30 > th dose dependent rect. 12 2
12 311.31 humidity 80.0 90 < th dose independent rect. 12 1
22 311.94 wind 9.0 90 < th dose dependent rect. 12 1
29 312.39 humidity 90.0 90 < th dose dependent rect. 12 1
32 312.68 radiation 40.0 30 > th dose dependent rect. 12 2
54 312.75 temperature 20.0 270 > th dose independent rect. 11 23
56 312.79 wind 7.0 90 < th dose independent rect. 12 1
59 312.85 temperature 10.0 90 > th dose independent rect. 12 1
63 312.85 atmosphere 1015.0 90 < th dose independent rect. 12 1
64 312.85 precipitation 0.1 90 < th dose independent rect. 12 1
65 312.85 temperature 10.0 90 > th dose independent rect. 13 23
67 312.85 precipitation 0.1 90 < th dose dependent rect. 12 1
76 313.11 temperature 20.0 90 < th dose dependent rect. 6 15
77 313.17 humidity 50.0 90 > th dose independent rect. 12 1
80 313.30 wind 9.0 90 < th dose independent rect. 13 23
104 313.68 temperature 10.0 90 > th dose dependent rect. 12 1
109 313.95 temperature 20.0 270 > th dose independent rect. 24 23
110 314.07 temperature 20.0 270 > th dose independent rect. 21 12
111 314.18 temperature 10.0 30 > th dose dependent rect. 14 22
113 314.22 wind 5.0 4320 > th dose independent rect. 20 6
121 314.36 wind 1.0 90 > th dose independent rect. 12 1
125 314.47 wind 5.0 4320 < th dose independent rect. 20 6
150 314.62 temperature 30.0 90 < th dose independent rect. 12 1
155 314.75 temperature 20.0 270 > th dose independent no NA NA
157 314.83 temperature 20.0 270 < th dose independent rect. 18 14
159 314.96 temperature 20.0 270 < th dose independent rect. 10 22
164 315.08 precipitation 0.1 90 < th dose independent rect. 13 23
165 315.08 precipitation 0.1 90 < th dose dependent rect. 13 23
188 315.13 humidity 90.0 10 < th dose dependent rect. 12 2
192 315.17 wind 7.0 10 < th dose independent rect. 12 2
196 315.23 temperature 20.0 30 > th dose independent rect. 24 12
197 315.24 temperature 20.0 270 < th dose independent rect. 18 20
207 315.35 temperature 20.0 270 > th dose independent sin 9 NA
230 315.47 temperature 20.0 270 > th dose independent rect. 20 23
233 315.50 temperature 20.0 270 < th dose independent no NA NA
235 315.50 temperature 20.0 270 < th dose independent rect. 13 23
248 315.55 temperature 20.0 270 > th dose independent rect. 6 23
257 315.59 radiation 1.0 10 > th dose independent rect. 12 2
273 315.71 temperature 20.0 270 > th dose independent rect. 4 23
278 315.77 temperature 20.0 270 > th dose independent rect. 18 23
326 316.09 temperature 20.0 270 < th dose independent rect. 7 23
339 316.21 temperature 20.0 270 > th dose independent rect. 23 11
351 316.39 humidity 50.0 90 > th dose dependent rect. 12 1
355 316.47 radiation 40.0 10 > th dose independent sin 13 NA
365 316.56 temperature 20.0 270 < th dose independent sin 9 NA
368 316.60 temperature 25.0 10 > th dose independent rect. 12 2
383 316.64 temperature 25.0 720 < th dose dependent rect. 20 1
397 316.69 wind 9.0 10 < th dose independent rect. 14 22
400 316.70 temperature 10.0 1440 > th dose independent rect. 13 2
406 316.70 temperature 10.0 1440 > th dose independent rect. 15 22
445 316.98 temperature 20.0 30 > th dose independent rect. 20 16
448 317.02 atmosphere 995.0 90 > th dose independent rect. 13 23
450 317.05 humidity 50.0 10 > th dose independent rect. 12 2
494 317.39 wind 5.0 4320 > th dose dependent rect. 21 4
501 317.48 temperature 20.0 720 < th dose independent rect. 21 1
523 317.65 temperature 20.0 30 < th dose independent rect. 6 2
526 317.66 wind 1.0 90 > th dose dependent rect. 12 1
538 317.75 temperature 20.0 90 < th dose independent rect. 6 16
542 317.79 temperature 20.0 10 < th dose independent rect. 6 9
554 317.93 temperature 20.0 30 < th dose dependent rect. 6 3
558 317.98 temperature 20.0 270 < th dose independent rect. 24 8
566 318.00 atmosphere 1015.0 90 < th dose dependent rect. 12 1
574 318.08 wind 1.0 10 < th dose independent rect. 12 6
600 318.20 wind 1.0 270 < th dose independent rect. 16 1
602 318.20 wind 1.0 270 < th dose dependent rect. 16 1
649 318.43 temperature 30.0 90 < th dose dependent rect. 19 13
684 318.64 temperature 20.0 30 < th dose independent rect. 21 13
696 318.76 temperature 20.0 270 < th dose independent sin 23 NA
704 318.79 temperature 20.0 30 < th dose independent rect. 21 18
724 318.89 atmosphere 995.0 1440 > th dose independent rect. 13 1
742 318.93 humidity 80.0 720 > th dose independent rect. 24 1
745 318.96 temperature 20.0 30 > th dose independent rect. 3 9
762 319.06 radiation 40.0 10 > th dose dependent sin 13 NA
763 319.07 temperature 20.0 30 < th dose independent sin 23 NA
797 319.25 wind 1.0 90 < th dose independent rect. 13 8
803 319.28 wind 1.0 10 > th dose independent rect. 12 2
828 319.37 wind 5.0 4320 > th dose dependent rect. 19 8
845 319.43 temperature 20.0 30 < th dose dependent rect. 6 9
866 319.48 wind 1.0 90 < th dose dependent rect. 4 17
867 319.49 radiation 40.0 90 < th dose independent rect. 12 1
883 319.51 wind 1.0 90 < th dose dependent rect. 13 8
905 319.58 temperature 20.0 30 > th dose independent sin 23 NA
983 319.73 wind 5.0 10 > th dose independent rect. 8 1
987 319.73 wind 5.0 10 > th dose dependent rect. 8 1