FiT-DB / Search/ Help/ Sample detail

Os05g0227600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Quinonprotein alcohol dehydrogenase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0653) R2 : 0.404
β1 : -2.45 (0.249) R2dD : 0.144 R2D : 0.114
β2 : 0.624 (0.167) R2dC : 0.0194 R2C : -0.023
β3 : 2.55 (0.253) R2dE : 0.145 R2E : 0.13
β4 : 3.52 (0.685) R2dD*C : 0.0374 R2D*C : -0.00491
β5 : 4.84 (1.07) R2dD*E : 0.0319 R2D*E : 0.0523
γ1 : -0.911 (0.139) R2dN8 : 0.0752 R2N8 : 0.0323
σ : 1.23
deviance : 684.34
__
_____
C
peak time of C : 8.96
E
wheather : humidity
threshold : 89
memory length : 783
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 6.41
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
684.34 1.23 12.2 -2.45 0.624 2.55 3.52 4.84 -0.911 8.96 89 783 6.41 --
707.58 1.24 12.2 -2.79 0.474 3.09 3.57 -- -0.9 7.46 87.63 800 5.35 --
722.02 1.25 12.2 -2.38 0.461 2.91 -- 4.62 -0.913 8.42 88.92 805 5.75 --
736.92 1.26 12.2 -2.66 0.594 2.9 -- -- -0.921 9.88 88 823 6.32 --
731.42 1.26 12.2 -2.35 -- 2.87 -- 4.36 -0.921 -- 89.39 840 5.69 --
863.74 1.38 12.2 -2.69 0.769 -- 3.31 -- -1.01 5.98 -- -- -- --
881.45 1.39 12.2 -2.68 0.873 -- -- -- -1.03 4.26 -- -- -- --
751.27 1.28 12.2 -2.64 -- 3.01 -- -- -0.937 -- 88.66 840 5.66 --
921.21 1.41 12.1 -- 0.503 3.05 -- -- -0.634 11.2 90.28 833 6.22 --
922.6 1.42 12.2 -2.64 -- -- -- -- -1 -- -- -- -- --
1070.49 1.53 12.1 -- 0.822 -- -- -- -0.728 4.32 -- -- -- --
931.89 1.42 12.1 -- -- 3.11 -- -- -0.726 -- 90.93 855 5.67 --
1106.9 1.55 12.1 -- -- -- -- -- -0.71 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 683.88 humidity 90.0 720 < th dose dependent rect. 17 16
3 688.52 humidity 90.0 720 < th dose dependent rect. 17 8
5 689.82 humidity 90.0 720 < th dose dependent sin 12 NA
35 699.81 humidity 60.0 720 > th dose dependent rect. 14 19
37 700.95 humidity 80.0 720 < th dose independent rect. 17 6
67 705.18 precipitation 0.1 43200 > th dose independent rect. 15 1
68 705.18 precipitation 0.1 43200 > th dose dependent rect. 15 1
82 706.15 precipitation 0.1 43200 < th dose independent rect. 15 1
83 706.15 precipitation 0.1 43200 < th dose dependent rect. 15 1
89 706.66 humidity 60.0 720 > th dose dependent sin 14 NA
92 706.93 humidity 60.0 720 > th dose dependent rect. 15 10
100 707.55 radiation 20.0 1440 > th dose independent rect. 16 20
102 707.64 precipitation 0.1 43200 > th dose independent rect. 11 5
106 707.83 precipitation 0.1 43200 > th dose independent rect. 7 10
107 707.85 precipitation 0.1 43200 < th dose independent rect. 11 5
108 707.85 precipitation 0.1 43200 < th dose dependent rect. 11 5
112 708.12 precipitation 0.1 43200 < th dose independent rect. 7 10
113 708.12 precipitation 0.1 43200 < th dose dependent rect. 7 10
128 708.95 radiation 40.0 1440 > th dose dependent rect. 14 19
131 709.01 humidity 70.0 720 > th dose dependent rect. 19 6
135 709.12 humidity 60.0 720 > th dose dependent rect. 17 8
157 709.78 radiation 20.0 14400 > th dose independent rect. 6 2
175 710.09 humidity 70.0 720 > th dose dependent rect. 5 21
185 710.51 humidity 80.0 720 > th dose independent rect. 15 9
217 711.53 precipitation 0.1 43200 > th dose dependent rect. 9 7
255 712.88 humidity 80.0 720 < th dose independent sin 17 NA
262 713.25 humidity 90.0 43200 > th dose dependent rect. 15 1
266 713.31 temperature 30.0 43200 > th dose independent rect. 18 1
280 713.33 radiation 20.0 1440 > th dose independent rect. 6 6
300 713.55 wind 9.0 43200 < th dose dependent rect. 4 1
301 713.60 wind 1.0 43200 > th dose independent rect. 3 3
310 713.76 humidity 70.0 720 > th dose independent rect. 15 18
326 714.27 precipitation 0.1 43200 > th dose dependent rect. 6 11
327 714.27 humidity 70.0 720 > th dose dependent rect. 11 14
334 714.61 wind 1.0 43200 < th dose independent rect. 3 3
366 715.52 wind 3.0 14400 > th dose independent rect. 14 1
391 715.96 temperature 30.0 43200 > th dose dependent rect. 18 1
409 716.05 wind 3.0 14400 < th dose independent rect. 14 1
431 716.57 wind 5.0 14400 < th dose dependent rect. 14 1
437 716.70 radiation 10.0 14400 < th dose independent rect. 8 1
454 717.03 radiation 40.0 1440 > th dose dependent rect. 14 1
472 717.51 humidity 80.0 720 > th dose independent rect. 11 13
480 717.67 humidity 80.0 720 > th dose independent rect. 5 19
502 717.82 humidity 90.0 43200 > th dose dependent rect. 8 9
511 718.03 humidity 70.0 720 > th dose dependent rect. 1 23
556 719.20 humidity 80.0 720 > th dose independent sin 17 NA
568 719.36 wind 1.0 43200 < th dose dependent rect. 3 3
577 719.58 humidity 60.0 720 > th dose dependent rect. 18 23
578 719.59 wind 1.0 43200 > th dose dependent rect. 4 1
582 719.68 radiation 20.0 1440 < th dose independent rect. 16 20
613 719.97 temperature 30.0 43200 < th dose independent rect. 18 2
635 720.31 humidity 80.0 720 > th dose independent rect. 5 21
637 720.33 humidity 80.0 720 < th dose independent rect. 11 13
640 720.37 temperature 30.0 43200 < th dose independent rect. 18 9
669 720.70 radiation 20.0 14400 < th dose dependent rect. 8 1
683 721.05 humidity 60.0 720 > th dose dependent no NA NA
688 721.14 humidity 70.0 720 > th dose independent sin 11 NA
690 721.20 temperature 30.0 43200 < th dose independent rect. 18 13
808 722.26 humidity 90.0 43200 > th dose dependent rect. 13 4
818 722.49 wind 9.0 43200 > th dose dependent rect. 18 1
835 722.67 wind 1.0 43200 > th dose independent rect. 1 5
842 722.82 humidity 90.0 43200 > th dose dependent rect. 12 6
857 723.01 radiation 20.0 14400 > th dose dependent rect. 7 1
872 723.28 radiation 20.0 1440 > th dose independent sin 9 NA
875 723.31 wind 1.0 43200 > th dose independent rect. 17 1
884 723.43 wind 1.0 14400 > th dose dependent rect. 14 1
905 723.51 wind 1.0 43200 < th dose independent rect. 1 5
906 723.51 wind 1.0 43200 > th dose dependent rect. 1 4
910 723.56 humidity 70.0 720 < th dose independent rect. 15 18
917 723.68 humidity 90.0 43200 > th dose independent rect. 9 7
948 723.98 humidity 70.0 1440 < th dose independent rect. 11 1
967 724.32 radiation 40.0 4320 > th dose dependent rect. 9 1
971 724.39 humidity 70.0 720 < th dose independent sin 12 NA
979 724.52 radiation 40.0 4320 > th dose dependent rect. 7 3
999 724.54 radiation 20.0 1440 < th dose dependent rect. 5 7