Os05g0227100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os05g0227100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.44 | 0.353 | 12.7 | -1.32 | 0.711 | -0.733 | -0.0541 | 0.266 | 0.149 | 22.5 | 25.7 | 255 | -- | -- |
| 56.5 | 0.35 | 12.7 | -1.28 | 0.725 | -0.753 | -0.0305 | -- | 0.16 | 22.5 | 25.7 | 226 | -- | -- |
| 56.44 | 0.35 | 12.7 | -1.32 | 0.717 | -0.738 | -- | 0.244 | 0.149 | 22.5 | 25.7 | 241 | -- | -- |
| 56.49 | 0.35 | 12.7 | -1.28 | 0.728 | -0.755 | -- | -- | 0.158 | 22.5 | 25.7 | 214 | -- | -- |
| 75.91 | 0.406 | 12.7 | -1.51 | -- | -1.03 | -- | 0.741 | 0.0754 | -- | 28.94 | 742 | -- | -- |
| 64.83 | 0.377 | 12.7 | -1.09 | 0.71 | -- | -0.0949 | -- | 0.32 | 21.7 | -- | -- | -- | -- |
| 64.87 | 0.377 | 12.7 | -1.08 | 0.711 | -- | -- | -- | 0.32 | 21.8 | -- | -- | -- | -- |
| 76.55 | 0.408 | 12.7 | -1.38 | -- | -1.05 | -- | -- | 0.102 | -- | 28.6 | 762 | -- | -- |
| 94.99 | 0.454 | 12.7 | -- | 0.726 | -0.203 | -- | -- | 0.405 | 21.9 | 25.6 | 69 | -- | -- |
| 94.93 | 0.455 | 12.7 | -1.08 | -- | -- | -- | -- | 0.319 | -- | -- | -- | -- | -- |
| 95.85 | 0.458 | 12.7 | -- | 0.708 | -- | -- | -- | 0.441 | 21.6 | -- | -- | -- | -- |
| 120.6 | 0.511 | 12.7 | -- | -- | -0.512 | -- | -- | 0.352 | -- | 29.3 | 717 | -- | -- |
| 125.55 | 0.523 | 12.6 | -- | -- | -- | -- | -- | 0.439 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.06 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 11 | 55.17 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 21 |
| 17 | 55.41 | temperature | 10 | 90 | > th | dose dependent | rect. | 6 | 22 |
| 28 | 55.84 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 30 | 55.87 | temperature | 10 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 31 | 55.90 | temperature | 20 | 270 | > th | dose dependent | sin | 10 | NA |
| 36 | 55.99 | temperature | 20 | 90 | > th | dose dependent | sin | 8 | NA |
| 44 | 56.11 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 22 |
| 54 | 56.21 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 71 | 56.34 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 82 | 56.49 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 99 | 56.58 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 4 |
| 112 | 56.66 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 119 | 56.68 | temperature | 25 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 123 | 56.71 | temperature | 25 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 126 | 56.72 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 130 | 56.73 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 133 | 56.75 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 150 | 56.80 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 7 |
| 172 | 56.88 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 13 |
| 176 | 56.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 6 |
| 186 | 56.94 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 1 |
| 190 | 56.94 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 193 | 56.95 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 5 |
| 202 | 57.01 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 13 |
| 216 | 57.04 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 288 | 57.19 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 13 |
| 339 | 57.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 2 |
| 356 | 57.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 2 |
| 366 | 57.36 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 388 | 57.40 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 7 |
| 481 | 57.55 | wind | 9 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 492 | 57.56 | temperature | 20 | 10 | > th | dose independent | rect. | 6 | 23 |
| 503 | 57.57 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 7 | 21 |
| 515 | 57.59 | temperature | 25 | 270 | < th | dose independent | sin | 9 | NA |
| 518 | 57.59 | wind | 9 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 582 | 57.64 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 607 | 57.66 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 615 | 57.67 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 616 | 57.67 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 626 | 57.69 | temperature | 25 | 14400 | > th | dose independent | sin | 1 | NA |
| 667 | 57.72 | wind | 9 | 14400 | < th | dose independent | rect. | 4 | 8 |
| 733 | 57.77 | temperature | 25 | 14400 | < th | dose independent | sin | 1 | NA |
| 763 | 57.79 | temperature | 20 | 90 | > th | dose independent | rect. | 18 | 10 |
| 899 | 57.88 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 15 |