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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0226000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.1 (0.0154) R2 : 0.000167
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00895 (0.0324) R2dN8 : 0.000216 R2N8 : 0.000167
σ : 0.29
deviance : 38.52
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
36.02 0.282 3.1 0.0868 0.151 0.176 0.0358 0.757 -0.00131 7.83 70.31 4991 -- --
36.65 0.282 3.1 0.0471 0.13 0.261 0.0207 -- -0.0201 7.63 71 4410 -- --
35.96 0.279 3.1 0.104 0.128 0.168 -- 0.805 0.00156 7.82 70.9 5897 -- --
36.64 0.282 3.11 0.0377 0.126 0.258 -- -- -0.0216 7.61 70.44 4406 -- --
36.85 0.283 3.11 0.0967 -- 0.169 -- 0.782 -0.00101 -- 70.14 5842 -- --
37.59 0.287 3.1 0.0428 0.128 -- -0.0641 -- 0.0117 7.61 -- -- -- --
37.6 0.287 3.1 0.0414 0.127 -- -- -- 0.0119 7.75 -- -- -- --
37.48 0.285 3.11 0.0436 -- 0.25 -- -- -0.0171 -- 71 4374 -- --
36.68 0.282 3.11 -- 0.126 0.253 -- -- -0.026 7.6 70.96 4406 -- --
38.47 0.29 3.1 0.043 -- -- -- -- 0.0137 -- -- -- -- --
37.65 0.287 3.1 -- 0.128 -- -- -- 0.00729 7.73 -- -- -- --
37.52 0.285 3.11 -- -- 0.254 -- -- -0.0248 -- 70.59 4369 -- --
38.52 0.29 3.1 -- -- -- -- -- 0.00895 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.68 wind 1.0 30 < th dose independent rect. 10 1
2 33.68 temperature 10.0 1440 > th dose independent rect. 11 1
6 33.68 atmosphere 995.0 1440 > th dose independent rect. 11 1
9 33.68 precipitation 0.1 1440 < th dose independent rect. 11 1
10 33.68 temperature 10.0 1440 > th dose independent rect. 12 23
13 33.68 wind 1.0 30 < th dose dependent rect. 10 1
14 33.68 precipitation 0.1 1440 < th dose dependent rect. 11 1
15 33.97 humidity 70.0 30 < th dose independent rect. 10 1
16 34.02 temperature 25.0 30 > th dose dependent rect. 10 1
17 34.07 atmosphere 1010.0 30 < th dose independent rect. 10 1
19 34.18 radiation 40.0 30 < th dose independent rect. 10 1
20 34.19 atmosphere 1005.0 30 > th dose independent rect. 10 1
21 34.19 humidity 70.0 30 < th dose dependent rect. 10 1
23 34.25 temperature 25.0 30 > th dose independent rect. 10 1
26 34.26 atmosphere 1000.0 30 > th dose dependent rect. 10 1
27 34.28 radiation 20.0 30 > th dose independent rect. 10 1
34 34.38 wind 5.0 30 < th dose dependent rect. 10 1
37 34.41 temperature 30.0 30 < th dose independent rect. 10 1
41 34.44 humidity 60.0 30 > th dose independent rect. 10 1
45 34.47 temperature 10.0 30 > th dose independent rect. 10 1
48 34.47 humidity 90.0 30 < th dose independent rect. 10 1
52 34.47 precipitation 0.1 30 < th dose independent rect. 10 1
53 34.47 temperature 10.0 30 > th dose independent rect. 11 23
54 34.47 precipitation 0.1 30 < th dose dependent rect. 10 1
55 34.48 radiation 40.0 30 < th dose dependent rect. 10 1
56 34.50 wind 1.0 30 > th dose independent rect. 10 1
58 34.55 atmosphere 1005.0 90 > th dose dependent rect. 2 1
59 34.66 radiation 1.0 30 > th dose dependent rect. 10 1
60 34.74 atmosphere 1005.0 10 > th dose dependent rect. 2 2
65 34.80 temperature 20.0 30 > th dose dependent rect. 2 1
66 34.81 atmosphere 1005.0 30 > th dose independent rect. 2 1
67 34.82 temperature 20.0 30 > th dose independent rect. 2 1
71 34.84 humidity 50.0 30 > th dose dependent rect. 10 1
75 34.90 wind 3.0 30 < th dose independent rect. 2 1
78 34.90 wind 5.0 30 < th dose dependent rect. 2 1
81 34.91 humidity 80.0 30 > th dose independent rect. 2 1
83 34.91 humidity 50.0 30 > th dose dependent rect. 2 1
87 34.92 temperature 10.0 30 > th dose independent rect. 2 1
89 34.92 temperature 30.0 30 < th dose independent rect. 2 1
90 34.92 humidity 50.0 30 > th dose independent rect. 2 1
94 34.92 atmosphere 1010.0 30 < th dose independent rect. 2 1
96 34.92 radiation 1.0 30 < th dose independent rect. 2 1
101 34.92 precipitation 0.1 30 < th dose independent rect. 2 1
102 34.92 temperature 10.0 30 > th dose independent rect. 3 23
103 34.92 radiation 1.0 30 < th dose dependent rect. 2 1
108 34.92 precipitation 0.1 30 < th dose dependent rect. 2 1
110 34.93 atmosphere 1000.0 30 > th dose independent rect. 3 23
116 35.02 wind 1.0 30 > th dose independent rect. 2 1
117 35.02 wind 1.0 30 > th dose dependent rect. 10 1
118 35.02 atmosphere 1015.0 30 < th dose dependent rect. 10 1
120 35.06 atmosphere 1015.0 30 < th dose dependent rect. 2 1
121 35.08 temperature 30.0 30 < th dose dependent rect. 2 1
122 35.08 radiation 1.0 4320 < th dose dependent rect. 3 1
131 35.13 wind 9.0 1440 < th dose independent rect. 3 1
132 35.13 temperature 10.0 1440 > th dose independent rect. 3 1
135 35.13 temperature 30.0 1440 < th dose independent rect. 3 1
139 35.13 humidity 50.0 1440 > th dose independent rect. 3 1
148 35.13 atmosphere 995.0 1440 > th dose independent rect. 3 1
149 35.13 radiation 1.0 1440 < th dose independent rect. 3 1
169 35.13 temperature 10.0 1440 > th dose independent rect. 4 23
261 35.53 humidity 90.0 90 < th dose independent rect. 2 1
265 35.55 precipitation 0.1 30 < th dose independent rect. 3 23
267 35.55 precipitation 0.1 30 < th dose dependent rect. 3 23
270 35.58 wind 9.0 30 < th dose independent rect. 11 23
277 35.63 wind 1.0 14400 < th dose dependent rect. 6 1
278 35.63 humidity 80.0 14400 < th dose dependent rect. 5 4
313 35.69 temperature 30.0 43200 > th dose dependent rect. 8 1
328 35.72 humidity 70.0 14400 > th dose independent rect. 19 14
346 35.74 humidity 70.0 14400 > th dose independent rect. 5 5
357 35.75 humidity 70.0 14400 > th dose independent rect. 7 3
364 35.77 wind 9.0 30 < th dose independent rect. 3 23
365 35.78 temperature 30.0 14400 > th dose independent rect. 8 1
366 35.78 humidity 70.0 4320 > th dose independent rect. 10 1
367 35.78 humidity 60.0 4320 < th dose independent rect. 12 1
372 35.78 humidity 70.0 14400 < th dose independent rect. 6 4
398 35.79 humidity 70.0 14400 < th dose independent rect. 8 2
399 35.79 humidity 70.0 4320 < th dose independent rect. 10 2
405 35.80 wind 1.0 14400 < th dose dependent rect. 4 3
410 35.81 humidity 50.0 4320 > th dose dependent rect. 11 2
425 35.85 wind 1.0 14400 < th dose independent rect. 4 3
426 35.85 temperature 30.0 14400 < th dose independent rect. 5 4
443 35.86 atmosphere 995.0 1440 > th dose independent rect. 3 12
446 35.86 humidity 80.0 4320 < th dose dependent rect. 12 1
452 35.87 wind 1.0 14400 > th dose independent rect. 4 3
464 35.88 temperature 30.0 14400 < th dose independent rect. 24 9
485 35.90 humidity 80.0 4320 > th dose dependent rect. 8 1
495 35.91 temperature 30.0 14400 < th dose independent rect. 19 14
535 35.93 humidity 50.0 30 > th dose independent rect. 3 23
554 35.94 humidity 50.0 4320 > th dose dependent rect. 3 12
570 35.95 humidity 70.0 4320 > th dose dependent rect. 3 8
583 35.96 humidity 80.0 4320 < th dose dependent rect. 14 1
592 35.96 wind 3.0 30 < th dose dependent rect. 2 11
607 35.97 humidity 90.0 90 < th dose dependent rect. 2 1
622 35.97 humidity 90.0 4320 < th dose dependent rect. 5 11
627 35.97 humidity 90.0 4320 < th dose dependent rect. 23 17
670 35.98 humidity 90.0 4320 < th dose dependent rect. 7 9
749 36.00 humidity 70.0 4320 > th dose independent sin 4 NA
771 36.00 humidity 50.0 4320 > th dose dependent sin 3 NA
778 36.00 wind 1.0 14400 < th dose dependent rect. 2 6
799 36.01 humidity 70.0 4320 < th dose independent sin 3 NA
876 36.01 humidity 50.0 14400 > th dose dependent rect. 8 1
968 36.03 wind 3.0 14400 > th dose independent rect. 19 1