Os05g0225800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Szp protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0225800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Szp protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.51 | 0.328 | 3.48 | 1.09 | 0.00369 | -59.5 | -0.304 | -123 | 0.0738 | 3.88 | 15 | 90 | -- | -- |
| 49.52 | 0.33 | 2.97 | 0.0211 | 0.004 | -1.21 | -0.297 | -- | 0.0727 | 4.02 | 15 | 90 | -- | -- |
| 49.78 | 0.329 | 3.48 | 1.1 | 0.00474 | -59.6 | -- | -123 | 0.0779 | 4.12 | 15 | 92 | -- | -- |
| 49.7 | 0.331 | 2.97 | 0.0272 | 0.0352 | -1.27 | -- | -- | 0.0749 | 9.5 | 15 | 90 | -- | -- |
| 49.78 | 0.329 | 3.48 | 1.1 | -- | -59.6 | -- | -123 | 0.076 | -- | 15.01 | 92 | -- | -- |
| 52.29 | 0.339 | 2.97 | -0.0306 | 0.00898 | -- | -0.394 | -- | 0.06 | 2.8 | -- | -- | -- | -- |
| 52.8 | 0.34 | 2.97 | -0.0213 | 0.0224 | -- | -- | -- | 0.0622 | 7.11 | -- | -- | -- | -- |
| 49.78 | 0.33 | 2.97 | 0.0264 | -- | -1.25 | -- | -- | 0.0748 | -- | 15 | 90 | -- | -- |
| 49.72 | 0.328 | 2.97 | -- | 0.0348 | -1.25 | -- | -- | 0.0719 | 9.28 | 14.68 | 106 | -- | -- |
| 52.83 | 0.34 | 2.97 | -0.0209 | -- | -- | -- | -- | 0.0626 | -- | -- | -- | -- | -- |
| 52.81 | 0.34 | 2.97 | -- | 0.0221 | -- | -- | -- | 0.0645 | 7.17 | -- | -- | -- | -- |
| 49.79 | 0.329 | 2.97 | -- | -- | -1.24 | -- | -- | 0.0721 | -- | 14.65 | 135 | -- | -- |
| 52.84 | 0.339 | 2.97 | -- | -- | -- | -- | -- | 0.0649 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.03 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 6 | 46.03 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 9 | 46.14 | radiation | 30.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 10 | 46.20 | humidity | 80.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 13 | 46.22 | humidity | 60.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 14 | 46.23 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 14 | 1 |
| 15 | 46.24 | wind | 5.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 16 | 46.24 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 17 | 46.24 | radiation | 10.0 | 30 | > th | dose dependent | rect. | 14 | 1 |
| 18 | 46.25 | wind | 3.0 | 30 | > th | dose dependent | rect. | 14 | 1 |
| 19 | 46.26 | temperature | 25.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 25 | 46.27 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 14 | 1 |
| 30 | 46.30 | temperature | 30.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 32 | 46.30 | radiation | 40.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 37 | 46.34 | wind | 7.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 40 | 46.35 | temperature | 10.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 43 | 46.35 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 46 | 46.35 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 14 | 1 |
| 47 | 46.35 | temperature | 10.0 | 30 | > th | dose independent | rect. | 15 | 23 |
| 48 | 46.35 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 49 | 46.37 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 53 | 46.57 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 54 | 46.59 | wind | 9.0 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 55 | 46.65 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 14 | 1 |
| 57 | 46.91 | wind | 9.0 | 30 | < th | dose independent | rect. | 15 | 23 |
| 164 | 48.58 | temperature | 15.0 | 90 | > th | dose independent | rect. | 15 | 11 |
| 166 | 48.77 | temperature | 15.0 | 270 | > th | dose independent | rect. | 20 | 13 |
| 167 | 48.91 | wind | 1.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 168 | 48.94 | temperature | 15.0 | 30 | > th | dose independent | rect. | 19 | 23 |
| 172 | 48.96 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 180 | 49.11 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 16 | 7 |
| 205 | 49.20 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 208 | 49.22 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 209 | 49.23 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 216 | 49.24 | temperature | 15.0 | 10 | > th | dose independent | rect. | 4 | 23 |
| 218 | 49.26 | temperature | 15.0 | 270 | > th | dose independent | rect. | 4 | 22 |
| 223 | 49.30 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 7 | 10 |
| 231 | 49.32 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 22 | 8 |
| 234 | 49.33 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 9 | 14 |
| 235 | 49.33 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 278 | 49.37 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 12 | 5 |
| 281 | 49.38 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 20 | 3 |
| 282 | 49.38 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 7 | 10 |
| 293 | 49.40 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 295 | 49.40 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 12 | 4 |
| 299 | 49.41 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 304 | 49.41 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 7 | 11 |
| 307 | 49.42 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 11 | 12 |
| 310 | 49.42 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 19 | 11 |
| 312 | 49.43 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 324 | 49.44 | temperature | 15.0 | 90 | > th | dose independent | sin | 8 | NA |
| 325 | 49.44 | temperature | 15.0 | 270 | > th | dose independent | sin | 10 | NA |
| 329 | 49.44 | temperature | 15.0 | 90 | > th | dose independent | sin | 15 | NA |
| 342 | 49.45 | temperature | 15.0 | 10 | > th | dose independent | sin | 7 | NA |
| 384 | 49.45 | temperature | 15.0 | 10 | > th | dose independent | sin | 1 | NA |
| 411 | 49.46 | temperature | 15.0 | 720 | < th | dose independent | rect. | 23 | 2 |
| 416 | 49.46 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 4 | 13 |
| 417 | 49.46 | temperature | 15.0 | 720 | < th | dose independent | rect. | 11 | 14 |
| 424 | 49.46 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 4 | 16 |
| 429 | 49.47 | temperature | 15.0 | 270 | > th | dose independent | sin | 23 | NA |
| 430 | 49.47 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 14 | 2 |
| 448 | 49.47 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 4 | 18 |
| 451 | 49.47 | temperature | 15.0 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 452 | 49.47 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 14 | 2 |
| 467 | 49.47 | temperature | 15.0 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 478 | 49.48 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 5 | 18 |
| 479 | 49.48 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 484 | 49.49 | temperature | 15.0 | 270 | > th | dose independent | sin | 20 | NA |
| 519 | 49.49 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 4 | 13 |
| 523 | 49.50 | temperature | 15.0 | 1440 | < th | dose independent | sin | 22 | NA |
| 525 | 49.50 | temperature | 20.0 | 720 | < th | dose independent | rect. | 12 | 1 |
| 540 | 49.50 | temperature | 15.0 | 1440 | < th | dose dependent | sin | 23 | NA |
| 552 | 49.51 | temperature | 15.0 | 90 | > th | dose independent | no | NA | NA |
| 554 | 49.51 | temperature | 15.0 | 90 | < th | dose independent | sin | 7 | NA |
| 603 | 49.51 | temperature | 15.0 | 90 | < th | dose independent | no | NA | NA |
| 605 | 49.51 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 607 | 49.51 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 610 | 49.51 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 752 | 49.51 | temperature | 15.0 | 270 | < th | dose independent | rect. | 24 | 10 |