FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0225500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0261) R2 : 0.536
β1 : 1.28 (0.13) R2dD : 0.222 R2D : -0.18
β2 : 1.21 (0.0609) R2dC : 0.433 R2C : 0.357
β3 : -1.48 (0.173) R2dE : 0.304 R2E : -0.489
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 13.7 (1.49) R2dD*E : 0.423 R2D*E : -0.185
γ1 : 0.253 (0.0519) R2dN8 : 0.0328 R2N8 : -0.00627
σ : 0.451
deviance : 93.92
__
_____
C
peak time of C : 14.1
E
wheather : temperature
threshold : 30.59
memory length : 21
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
93.93 0.455 10.4 1.28 1.21 -1.48 -0.0441 13.7 0.253 14.1 30.59 20 -- --
110.18 0.493 10.5 0.387 1.16 0.393 0.000467 -- 0.276 14.2 33 47 -- --
93.92 0.451 10.4 1.28 1.21 -1.48 -- 13.7 0.253 14.1 30.59 21 -- --
110.18 0.492 10.5 0.387 1.16 0.393 -- -- 0.276 14.2 33 47 -- --
174.99 0.616 10.4 1.21 -- -1.01 -- 13.7 0.264 -- 30.5 22 -- --
111.61 0.495 10.5 0.401 1.19 -- 0.0597 -- 0.267 14.2 -- -- -- --
111.62 0.495 10.5 0.403 1.19 -- -- -- 0.267 14.2 -- -- -- --
151.65 0.576 10.5 0.204 -- 0.653 -- -- 0.045 -- 25.89 10 -- --
114.1 0.497 10.5 -- 1.15 0.483 -- -- 0.235 14.1 33.15 41 -- --
195.94 0.654 10.5 0.353 -- -- -- -- 0.238 -- -- -- -- --
115.9 0.504 10.5 -- 1.18 -- -- -- 0.222 14.2 -- -- -- --
152 0.574 10.5 -- -- 0.675 -- -- 0.0177 -- 25.89 12 -- --
199.23 0.659 10.5 -- -- -- -- -- 0.199 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 94.87 temperature 30 10 > th dose independent rect. 14 22
3 95.21 temperature 30 10 > th dose independent rect. 10 2
4 95.24 temperature 30 90 > th dose independent rect. 11 1
6 95.29 temperature 30 10 > th dose independent rect. 18 18
45 96.39 temperature 30 10 > th dose dependent rect. 10 2
46 96.40 temperature 30 10 > th dose dependent rect. 18 18
100 96.98 temperature 30 90 < th dose dependent rect. 14 16
120 97.04 temperature 30 30 > th dose independent sin 8 NA
122 97.08 temperature 30 10 > th dose dependent sin 7 NA
153 97.50 temperature 30 10 > th dose dependent rect. 16 20
214 98.15 temperature 30 30 < th dose dependent rect. 17 13
217 98.20 temperature 30 10 > th dose dependent rect. 14 23
366 99.72 temperature 20 90 > th dose independent rect. 6 20
406 99.86 temperature 20 90 > th dose independent rect. 6 22
414 99.96 temperature 30 10 > th dose dependent no NA NA
516 99.96 temperature 30 10 > th dose dependent rect. 11 23
599 100.17 temperature 20 10 > th dose independent rect. 6 22
607 100.28 atmosphere 995 90 > th dose dependent rect. 17 13
618 100.43 temperature 20 10 > th dose independent rect. 21 14
632 100.51 temperature 20 90 > th dose independent rect. 21 14
639 100.53 temperature 10 720 > th dose dependent rect. 12 5
689 100.86 atmosphere 995 270 > th dose dependent rect. 14 15
695 100.90 temperature 20 270 > th dose independent rect. 12 12
699 100.92 temperature 10 270 > th dose dependent rect. 19 13
899 101.10 temperature 30 30 > th dose independent no NA NA
900 101.10 temperature 30 30 > th dose independent rect. 9 10
1000 101.10 temperature 30 30 > th dose independent rect. 11 23