Os05g0224700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA polymerase Rpb7, N-terminal domain containing protein.
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Os05g0224700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA polymerase Rpb7, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 129.98 | 0.536 | 8.54 | 1.41 | 1.31 | -4.3 | -0.766 | -6.3 | 0.726 | 0.646 | 20.03 | 4999 | -- | -- |
| 136.73 | 0.545 | 8.72 | 1.31 | 1.35 | -1.86 | -0.896 | -- | 0.563 | 0.383 | 22.9 | 5760 | -- | -- |
| 130.22 | 0.531 | 8.39 | 1.27 | 1.36 | -8.13 | -- | -14.4 | 0.776 | 0.424 | 18.65 | 5702 | -- | -- |
| 138.6 | 0.548 | 8.72 | 1.3 | 1.32 | -1.87 | -- | -- | 0.6 | 0.671 | 22.9 | 6235 | -- | -- |
| 234.77 | 0.714 | 8.37 | 0.989 | -- | -8.46 | -- | -14.4 | 0.728 | -- | 18.9 | 6683 | -- | -- |
| 175.14 | 0.62 | 8.62 | 2.24 | 1.35 | -- | -0.753 | -- | 1.02 | 0.648 | -- | -- | -- | -- |
| 177.56 | 0.624 | 8.62 | 2.27 | 1.35 | -- | -- | -- | 1.03 | 0.679 | -- | -- | -- | -- |
| 245.89 | 0.73 | 8.71 | 1.34 | -- | -1.66 | -- | -- | 0.544 | -- | 33.99 | 9697 | -- | -- |
| 125.31 | 0.521 | 8.83 | -- | 1.3 | -2.21 | -- | -- | 0.116 | 0.656 | 35.35 | 47520 | -- | -- |
| 292.29 | 0.799 | 8.6 | 2.31 | -- | -- | -- | -- | 1.05 | -- | -- | -- | -- | -- |
| 312.95 | 0.828 | 8.68 | -- | 1.39 | -- | -- | -- | 0.775 | 0.756 | -- | -- | -- | -- |
| 231.43 | 0.709 | 8.81 | -- | -- | -2.29 | -- | -- | 0.11 | -- | 43.91 | 47520 | -- | -- |
| 433.64 | 0.972 | 8.66 | -- | -- | -- | -- | -- | 0.795 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 109.21 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 4 |
| 2 | 109.29 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 4 |
| 3 | 109.29 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 5 | 109.47 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 6 |
| 6 | 109.47 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 7 | 109.47 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 10 | 109.50 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 6 |
| 15 | 109.72 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 4 |
| 27 | 110.16 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 4 |
| 29 | 110.25 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 9 |
| 32 | 110.46 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 8 |
| 33 | 110.49 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 36 | 110.49 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 8 |
| 39 | 110.65 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 40 | 110.74 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 5 |
| 43 | 110.83 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 69 | 111.42 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 98 | 112.11 | wind | 7.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 102 | 112.25 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 108 | 112.48 | wind | 7.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 126 | 112.90 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 134 | 113.13 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 1 | 8 |
| 137 | 113.25 | wind | 1.0 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 139 | 113.30 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 155 | 113.67 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 10 |
| 163 | 113.79 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 164 | 113.82 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 185 | 114.32 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 212 | 114.93 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 218 | 115.09 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 5 |
| 220 | 115.10 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 16 |
| 230 | 115.28 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 233 | 115.29 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 238 | 115.34 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 309 | 115.95 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 10 |
| 310 | 115.95 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 7 | 11 |
| 312 | 115.96 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 315 | 115.96 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 5 | 13 |
| 349 | 116.03 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 351 | 116.03 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 357 | 116.04 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 358 | 116.04 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 359 | 116.04 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 367 | 116.06 | atmosphere | 1010.0 | 43200 | > th | dose dependent | sin | 23 | NA |
| 371 | 116.08 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 375 | 116.09 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 389 | 116.12 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 409 | 116.15 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 432 | 116.19 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 444 | 116.21 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 486 | 116.27 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 22 | 8 |
| 509 | 116.29 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 24 | 6 |
| 521 | 116.30 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 2 | 4 |
| 543 | 116.33 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 15 | 2 |
| 621 | 116.47 | wind | 1.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 626 | 116.48 | atmosphere | 1010.0 | 43200 | > th | dose dependent | no | NA | NA |
| 632 | 116.48 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 11 | 23 |
| 633 | 116.48 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 744 | 116.62 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 828 | 116.77 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 931 | 117.04 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 21 | 12 |
| 948 | 117.08 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 18 |
| 949 | 117.08 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 5 |
| 957 | 117.10 | radiation | 1.0 | 43200 | > th | dose independent | sin | 11 | NA |
| 958 | 117.10 | wind | 1.0 | 14400 | > th | dose independent | rect. | 23 | 4 |
| 959 | 117.10 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 21 | 12 |
| 986 | 117.17 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 991 | 117.18 | radiation | 1.0 | 43200 | < th | dose independent | sin | 10 | NA |