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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0223200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glycine-rich RNA-binding protein GRP2A.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.28 (0.0586) R2 : 0.436
β1 : -1.45 (0.22) R2dD : 0.0812 R2D : 0.0393
β2 : -- (--) R2dC : -- R2C : --
β3 : -4.29 (0.275) R2dE : 0.309 R2E : 0.282
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.752 (0.127) R2dN8 : 0.0521 R2N8 : 0.101
σ : 1.09
deviance : 549
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.3233
memory length : 3638
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
531.62 1.08 5.33 -2.23 1.73 -1.88 -0.883 4.11 0.679 17.5 0.2208 4149 -- --
548.23 1.09 5.28 -1.89 1.8 -2.12 -0.882 -- 0.711 17.4 0.1695 15589 -- --
530.82 1.07 5.32 -2.13 1.55 -2.08 -- 4.5 0.717 17 0.24 4045 -- --
542.32 1.08 5.25 -1.75 1.7 -2.68 -- -- 0.793 17.2 0.2093 4165 -- --
571.44 1.11 5.28 -1.62 -- -2.7 -- 4.96 0.81 -- 0.2058 3661 -- --
643.83 1.19 5.18 -0.891 1.89 -- -1.62 -- 1.14 18.3 -- -- -- --
650.01 1.19 5.18 -0.869 1.89 -- -- -- 1.14 18.1 -- -- -- --
549 1.09 5.28 -1.45 -- -4.29 -- -- 0.752 -- 0.3233 3638 -- --
607.32 1.15 5.2 -- 1.76 -1.91 -- -- 1.01 17.5 0.3231 4176 -- --
834.27 1.35 5.14 -0.922 -- -- -- -- 1.1 -- -- -- -- --
669.91 1.21 5.16 -- 1.9 -- -- -- 1.24 18.1 -- -- -- --
619.42 1.16 5.17 -- -- -3.78 -- -- 0.927 -- 0.33 3639 -- --
856.69 1.37 5.12 -- -- -- -- -- 1.2 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 502.94 atmosphere 1015 43200 < th dose independent rect. 18 1
3 503.69 atmosphere 1015 43200 > th dose independent rect. 15 1
15 504.03 atmosphere 1015 43200 < th dose independent rect. 15 1
22 504.50 radiation 30 14400 < th dose independent rect. 6 1
31 505.93 radiation 20 14400 > th dose dependent rect. 17 14
32 505.94 radiation 20 14400 > th dose dependent rect. 6 1
47 507.81 radiation 30 14400 < th dose independent rect. 18 13
48 508.32 radiation 30 14400 < th dose independent rect. 2 5
54 509.23 atmosphere 1015 43200 > th dose dependent rect. 19 1
57 510.68 radiation 20 14400 > th dose independent rect. 17 14
62 512.26 radiation 1 14400 < th dose dependent rect. 8 7
63 512.36 radiation 20 14400 > th dose independent rect. 6 1
77 512.62 temperature 15 43200 > th dose independent rect. 13 1
79 512.68 temperature 15 43200 < th dose independent rect. 13 1
82 512.97 atmosphere 1015 43200 > th dose dependent rect. 14 1
85 513.34 atmosphere 1015 43200 > th dose dependent rect. 14 6
86 513.42 radiation 1 14400 < th dose dependent rect. 10 3
92 513.52 radiation 1 14400 < th dose dependent rect. 9 5
107 514.08 radiation 40 14400 < th dose independent rect. 16 16
112 514.39 radiation 30 14400 > th dose dependent rect. 16 16
119 514.99 radiation 1 14400 > th dose independent rect. 10 4
131 515.64 radiation 1 14400 < th dose independent rect. 10 4
167 519.34 radiation 1 14400 > th dose independent rect. 8 7
170 520.17 radiation 1 14400 < th dose independent rect. 8 7
172 520.43 radiation 1 4320 < th dose dependent rect. 4 2
174 520.44 radiation 1 4320 < th dose dependent rect. 23 7
200 523.28 temperature 15 43200 > th dose independent rect. 17 1
212 524.45 radiation 1 14400 > th dose independent rect. 13 1
213 524.53 radiation 1 14400 < th dose independent rect. 13 1
214 524.53 radiation 1 14400 < th dose dependent rect. 13 1
223 524.99 temperature 15 43200 < th dose independent rect. 17 1
240 525.44 humidity 80 43200 > th dose independent rect. 18 1
275 526.42 radiation 30 14400 > th dose independent rect. 16 16
282 526.58 temperature 15 43200 < th dose independent rect. 10 10
287 526.69 temperature 15 43200 > th dose independent rect. 6 14
305 527.06 temperature 15 43200 < th dose independent rect. 5 15
327 527.29 temperature 15 43200 < th dose independent rect. 6 1
358 527.69 temperature 15 43200 > th dose independent rect. 6 9
367 527.74 temperature 15 43200 > th dose independent sin 22 NA
376 527.81 temperature 15 43200 < th dose independent rect. 5 10
402 528.16 temperature 15 43200 < th dose independent sin 23 NA
452 528.82 temperature 15 43200 < th dose independent rect. 5 6
483 529.18 humidity 80 43200 > th dose independent rect. 12 2
511 529.56 temperature 15 43200 > th dose independent rect. 6 1
520 529.83 radiation 1 4320 < th dose dependent rect. 17 14
535 530.08 humidity 80 43200 < th dose independent rect. 17 2
577 530.75 humidity 80 43200 > th dose dependent rect. 4 11
591 530.94 temperature 15 43200 > th dose independent rect. 6 5
618 531.58 humidity 80 43200 < th dose independent rect. 12 2
620 531.60 atmosphere 1015 43200 > th dose dependent rect. 1 1
624 531.76 humidity 80 43200 < th dose independent rect. 12 8
634 531.97 radiation 1 4320 < th dose dependent sin 10 NA
635 531.99 temperature 15 43200 > th dose independent rect. 10 1
661 532.24 humidity 80 43200 < th dose independent rect. 15 4
667 532.28 temperature 15 43200 < th dose independent rect. 10 1
672 532.31 radiation 1 14400 < th dose dependent rect. 17 1
676 532.33 radiation 1 14400 < th dose independent rect. 22 7
687 532.46 humidity 80 43200 > th dose dependent rect. 3 17
706 532.67 humidity 80 43200 > th dose dependent sin 2 NA
723 532.82 radiation 1 14400 < th dose dependent rect. 17 9
780 533.46 wind 9 43200 > th dose independent rect. 24 1
783 533.46 wind 9 43200 > th dose dependent rect. 24 1
814 533.76 wind 9 43200 > th dose dependent rect. 19 1
829 533.98 humidity 80 43200 > th dose independent rect. 12 7
839 534.09 radiation 10 14400 < th dose independent rect. 19 11
857 534.26 temperature 15 43200 < th dose independent rect. 12 23
881 534.32 humidity 90 43200 < th dose independent rect. 5 2
900 534.46 temperature 15 43200 < th dose independent rect. 10 23
901 534.46 temperature 15 43200 < th dose independent rect. 22 23
907 534.49 temperature 15 43200 < th dose independent no NA NA
918 534.58 temperature 15 43200 > th dose independent rect. 22 1
953 534.68 temperature 15 43200 < th dose independent rect. 8 23
954 534.69 temperature 15 43200 < th dose independent rect. 16 23
955 534.70 wind 9 43200 > th dose independent rect. 19 1
956 534.70 wind 9 43200 < th dose independent rect. 18 2
972 534.79 temperature 15 43200 < th dose independent rect. 22 1
982 534.84 radiation 1 4320 < th dose dependent rect. 17 19