Os05g0223000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calmodulin-related protein (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os05g0223000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Calmodulin-related protein (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.41 | 0.429 | 13.3 | 0.0165 | 2.02 | -0.897 | 0.863 | 2.13 | 0.0133 | 9.41 | 19.61 | 3776 | -- | -- |
| 88.56 | 0.438 | 13.3 | -0.199 | 2.09 | -0.98 | 0.733 | -- | 0.0597 | 9.5 | 15.36 | 14769 | -- | -- |
| 86.07 | 0.432 | 13.3 | -0.0165 | 2.02 | -0.9 | -- | 1.86 | -0.0024 | 9.39 | 19.2 | 3816 | -- | -- |
| 89.18 | 0.44 | 13.3 | -0.304 | 2.05 | -1.02 | -- | -- | 0.00618 | 9.46 | 14.4 | 10383 | -- | -- |
| 257.59 | 0.748 | 13.3 | 0.437 | -- | -2.35 | -- | 2.48 | 0.198 | -- | 17.12 | 730 | -- | -- |
| 104.36 | 0.479 | 13.4 | -0.936 | 2.09 | -- | 0.806 | -- | -0.326 | 9.5 | -- | -- | -- | -- |
| 106.75 | 0.484 | 13.4 | -0.906 | 2.09 | -- | -- | -- | -0.325 | 9.49 | -- | -- | -- | -- |
| 254.11 | 0.742 | 13.4 | -0.289 | -- | -2.27 | -- | -- | 0.0764 | -- | 17.7 | 729 | -- | -- |
| 90.95 | 0.444 | 13.3 | -- | 2.06 | -0.975 | -- | -- | 0.0519 | 9.49 | 13.1 | 23983 | -- | -- |
| 362.74 | 0.89 | 13.5 | -0.92 | -- | -- | -- | -- | -0.319 | -- | -- | -- | -- | -- |
| 128.38 | 0.53 | 13.4 | -- | 2.09 | -- | -- | -- | -0.224 | 9.53 | -- | -- | -- | -- |
| 256.1 | 0.745 | 13.4 | -- | -- | -2.38 | -- | -- | 0.122 | -- | 17.5 | 733 | -- | -- |
| 385.06 | 0.916 | 13.5 | -- | -- | -- | -- | -- | -0.217 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.62 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 2 | 80.65 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 23 | 81.90 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 35 | 82.03 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 77 | 82.41 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 111 | 82.61 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 134 | 82.76 | temperature | 25.0 | 720 | > th | dose independent | rect. | 17 | 2 |
| 151 | 82.86 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 173 | 82.96 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 199 | 83.11 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 240 | 83.30 | temperature | 20.0 | 4320 | > th | dose independent | sin | 12 | NA |
| 260 | 83.36 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 24 | 9 |
| 264 | 83.37 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 15 | 9 |
| 274 | 83.41 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 16 | 7 |
| 275 | 83.41 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 24 | 9 |
| 310 | 83.49 | temperature | 20.0 | 1440 | < th | dose independent | sin | 10 | NA |
| 311 | 83.49 | temperature | 20.0 | 4320 | < th | dose independent | sin | 12 | NA |
| 460 | 83.72 | temperature | 20.0 | 90 | > th | dose independent | rect. | 13 | 16 |
| 620 | 83.97 | temperature | 15.0 | 1440 | > th | dose dependent | sin | 9 | NA |
| 639 | 83.99 | temperature | 30.0 | 1440 | < th | dose dependent | sin | 9 | NA |
| 990 | 84.48 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 12 |
| 997 | 84.48 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 12 |