Os05g0221200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 2o545-prov protein.
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Os05g0221200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 2o545-prov protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.27 | 0.212 | 10.6 | 1.31 | 0.221 | -0.741 | 0.0924 | 2.5 | 0.42 | 2.02 | 20.36 | 1747 | -- | -- |
| 24.91 | 0.232 | 10.7 | 0.892 | 0.257 | -0.846 | -0.0306 | -- | 0.36 | 3.69 | 12.9 | 10012 | -- | -- |
| 20.3 | 0.21 | 10.6 | 1.3 | 0.222 | -0.74 | -- | 2.51 | 0.419 | 2.07 | 20.37 | 1762 | -- | -- |
| 24.36 | 0.23 | 10.7 | 0.809 | 0.255 | -0.843 | -- | -- | 0.335 | 2.76 | 11.14 | 9101 | -- | -- |
| 23.23 | 0.224 | 10.6 | 1.34 | -- | -0.745 | -- | 2.59 | 0.431 | -- | 20.64 | 1744 | -- | -- |
| 35.82 | 0.281 | 10.7 | 0.357 | 0.238 | -- | 0.00702 | -- | 0.0789 | 2.94 | -- | -- | -- | -- |
| 35.82 | 0.28 | 10.7 | 0.357 | 0.238 | -- | -- | -- | 0.0788 | 2.95 | -- | -- | -- | -- |
| 28.12 | 0.247 | 10.7 | 0.813 | -- | -0.83 | -- | -- | 0.333 | -- | -13.78 | 9017 | -- | -- |
| 32.75 | 0.267 | 10.7 | -- | 0.318 | -0.593 | -- | -- | 0.123 | 2.43 | 14.8 | 1153 | -- | -- |
| 39.08 | 0.292 | 10.7 | 0.367 | -- | -- | -- | -- | 0.085 | -- | -- | -- | -- | -- |
| 39.18 | 0.293 | 10.7 | -- | 0.245 | -- | -- | -- | 0.0391 | 2.96 | -- | -- | -- | -- |
| 35.05 | 0.277 | 10.7 | -- | -- | -0.704 | -- | -- | 0.124 | -- | 2.685 | 1729 | -- | -- |
| 42.63 | 0.305 | 10.7 | -- | -- | -- | -- | -- | 0.0443 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.16 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 2 | 19.24 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 7 |
| 6 | 19.38 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 10 |
| 10 | 19.50 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 12 | 19.52 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 22 | 19.70 | humidity | 90 | 14400 | > th | dose dependent | sin | 13 | NA |
| 23 | 19.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 6 |
| 44 | 19.83 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 106 | 20.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 118 | 20.12 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 148 | 20.24 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 161 | 20.26 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 162 | 20.26 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 175 | 20.27 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 18 |
| 178 | 20.28 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 238 | 20.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 21 |
| 288 | 20.44 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 350 | 20.51 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 395 | 20.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 402 | 20.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 903 | 20.89 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 939 | 20.91 | humidity | 90 | 14400 | > th | dose independent | sin | 12 | NA |
| 943 | 20.91 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 998 | 20.94 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |