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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0220500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8 (0.0435) R2 : 0.919
β1 : -- (--) R2dD : -- R2D : --
β2 : 4.14 (0.247) R2dC : 0.236 R2C : 0.656
β3 : -3.6 (0.21) R2dE : 0.246 R2E : 0.677
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.646 (0.0928) R2dN8 : 0.0115 R2N8 : 0.0109
σ : 0.817
deviance : 307.36
__
_____
C
peak time of C : 6.41
E
wheather : temperature
threshold : 19.68
memory length : 250
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12.4
open length of G : 8.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
303.28 0.818 8 -0.105 4.12 -3.58 0.65 -0.661 -0.654 6.46 19.64 256 12.2 8.92
303.43 0.811 8 -0.0923 4.14 -3.56 1.31 -- -0.657 6.46 19.62 254 12.3 8.87
303.61 0.812 7.99 -0.117 4.19 -3.53 -- -0.903 -0.645 6.41 19.65 256 12.3 8.9
307.38 0.817 8 -0.0558 4.13 -3.6 -- -- -0.653 6.42 19.64 252 12.4 8.85
531.37 1.07 8.15 -0.343 -- -5.88 -- -2.41 -0.433 -- 18.1 154 12.7 9.87
465.4 1.01 7.96 -0.473 7.9 -- 2.2 -- -0.941 6.71 -- -- -- --
477.62 1.02 7.97 -0.438 7.91 -- -- -- -0.948 6.7 -- -- -- --
357.68 0.881 8.08 0.211 -- -7.01 -- -- -0.555 -- 18.5 374 10.5 10
307.36 0.817 8 -- 4.14 -3.6 -- -- -0.646 6.41 19.68 250 12.4 8.8
3740.91 2.86 8.13 -0.255 -- -- -- -- -0.79 -- -- -- -- --
482.68 1.03 7.96 -- 7.9 -- -- -- -0.899 6.7 -- -- -- --
347.05 0.868 8.1 -- -- -7.24 -- -- -0.658 -- 18.49 363 10.8 9.7
3742.63 2.86 8.12 -- -- -- -- -- -0.762 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 308.82 temperature 20.0 270 > th dose independent rect. 12 9
6 324.67 temperature 10.0 270 > th dose dependent rect. 12 9
8 328.42 temperature 30.0 270 < th dose dependent rect. 18 7
10 329.84 temperature 10.0 90 > th dose dependent rect. 14 9
12 330.21 temperature 10.0 10 > th dose dependent rect. 14 9
14 330.40 wind 1.0 270 > th dose independent rect. 12 9
19 331.18 temperature 10.0 270 > th dose dependent rect. 13 19
21 332.52 atmosphere 1015.0 270 < th dose independent rect. 12 9
25 333.11 atmosphere 1015.0 270 < th dose independent rect. 13 19
29 333.93 temperature 15.0 270 > th dose independent rect. 13 19
35 334.71 temperature 10.0 270 > th dose independent rect. 8 5
36 334.71 atmosphere 995.0 270 > th dose independent rect. 8 5
37 334.71 atmosphere 1015.0 270 < th dose independent rect. 8 5
40 334.93 precipitation 0.1 270 < th dose independent rect. 8 5
41 334.93 precipitation 0.1 270 < th dose dependent rect. 8 5
45 335.56 wind 9.0 270 < th dose independent rect. 8 5
52 336.02 temperature 10.0 270 > th dose independent rect. 1 7
54 336.02 temperature 30.0 270 < th dose independent rect. 1 7
55 336.02 humidity 50.0 270 > th dose independent rect. 1 7
57 336.02 atmosphere 995.0 270 > th dose independent rect. 1 7
58 336.02 atmosphere 1015.0 270 < th dose independent rect. 1 7
59 336.02 temperature 10.0 270 > th dose independent rect. 8 17
62 336.09 wind 9.0 270 < th dose independent rect. 1 7
64 336.20 humidity 90.0 270 < th dose independent rect. 12 8
65 336.35 radiation 1.0 270 > th dose independent rect. 8 5
68 336.52 wind 9.0 270 < th dose independent rect. 13 19
70 336.53 temperature 10.0 270 > th dose independent rect. 21 15
71 336.53 atmosphere 995.0 270 > th dose independent rect. 21 15
73 336.55 wind 9.0 270 < th dose independent rect. 8 17
87 336.70 radiation 40.0 270 < th dose independent rect. 1 7
92 337.20 temperature 20.0 10 > th dose independent rect. 14 20
93 337.42 wind 9.0 270 < th dose independent rect. 20 16
98 337.63 precipitation 0.1 270 < th dose independent rect. 21 15
99 337.63 precipitation 0.1 270 < th dose dependent rect. 21 15
110 338.39 wind 9.0 270 < th dose independent rect. 12 8
111 338.56 precipitation 0.1 270 < th dose independent rect. 13 19
112 338.56 precipitation 0.1 270 < th dose dependent rect. 13 19
115 338.80 temperature 10.0 10 > th dose dependent rect. 14 20
116 338.81 precipitation 0.1 270 < th dose independent rect. 1 7
117 338.81 precipitation 0.1 270 < th dose dependent rect. 1 7
120 339.34 precipitation 0.1 270 < th dose independent rect. 12 8
121 339.34 precipitation 0.1 270 < th dose dependent rect. 12 8
123 339.45 humidity 50.0 270 > th dose independent rect. 8 5
147 340.48 humidity 50.0 270 > th dose independent rect. 20 16
148 340.57 precipitation 0.1 270 < th dose independent rect. 8 17
149 340.57 precipitation 0.1 270 < th dose dependent rect. 8 17
165 341.34 wind 1.0 270 > th dose independent rect. 8 5
182 342.74 temperature 10.0 270 > th dose independent rect. 9 2
183 342.74 atmosphere 995.0 270 > th dose independent rect. 9 2
184 342.74 atmosphere 1015.0 270 < th dose independent rect. 9 2
185 342.74 temperature 10.0 270 > th dose independent rect. 11 22
188 342.91 radiation 10.0 10 > th dose independent rect. 10 4
189 342.93 atmosphere 1015.0 10 < th dose independent rect. 14 20
190 343.02 precipitation 0.1 270 < th dose independent rect. 9 2
191 343.02 precipitation 0.1 270 < th dose dependent rect. 9 2
194 343.15 wind 9.0 10 < th dose independent rect. 2 8
195 343.15 temperature 10.0 10 > th dose independent rect. 2 8
197 343.15 humidity 50.0 10 > th dose independent rect. 2 8
198 343.15 atmosphere 995.0 10 > th dose independent rect. 2 8
199 343.15 atmosphere 1015.0 10 < th dose independent rect. 2 8
200 343.15 temperature 10.0 10 > th dose independent rect. 10 16
202 343.21 wind 9.0 270 < th dose independent rect. 9 2
203 343.47 wind 9.0 10 < th dose independent rect. 10 16
213 343.75 precipitation 0.1 10 < th dose independent rect. 14 9
214 343.75 precipitation 0.1 10 < th dose dependent rect. 14 9
225 344.48 atmosphere 995.0 270 > th dose independent rect. 8 17
232 344.69 humidity 50.0 270 > th dose independent rect. 9 2
233 344.73 wind 1.0 270 > th dose independent rect. 9 2
249 345.37 radiation 1.0 270 < th dose dependent rect. 16 10
250 345.41 radiation 1.0 270 > th dose independent rect. 9 2
277 346.31 humidity 50.0 270 > th dose dependent rect. 1 7
281 346.53 wind 9.0 270 < th dose independent rect. 11 22
306 347.19 atmosphere 995.0 270 > th dose independent rect. 13 19
323 347.90 temperature 30.0 10 < th dose dependent rect. 21 5
326 347.98 atmosphere 995.0 10 > th dose independent rect. 10 16
335 348.18 temperature 30.0 10 < th dose dependent rect. 19 7
337 348.27 radiation 40.0 270 < th dose dependent rect. 1 7
340 348.30 atmosphere 995.0 270 > th dose independent rect. 12 8
350 348.57 radiation 40.0 270 < th dose independent rect. 14 17
351 348.58 radiation 40.0 30 < th dose independent rect. 13 10
367 348.98 radiation 1.0 270 < th dose independent rect. 16 10
369 349.01 radiation 1.0 270 > th dose independent rect. 13 18
371 349.08 temperature 10.0 1440 > th dose independent rect. 3 8
374 349.08 atmosphere 995.0 1440 > th dose independent rect. 3 8
375 349.08 temperature 10.0 1440 > th dose independent rect. 11 16
389 349.25 temperature 10.0 10 > th dose independent rect. 10 4
391 349.25 atmosphere 995.0 10 > th dose independent rect. 10 4
392 349.25 atmosphere 1015.0 10 < th dose independent rect. 10 4
393 349.25 precipitation 0.1 10 < th dose independent rect. 10 4
395 349.25 precipitation 0.1 10 < th dose dependent rect. 10 4
396 349.31 temperature 10.0 10 > th dose independent rect. 14 9
398 349.31 atmosphere 1010.0 10 < th dose independent rect. 14 9
400 349.31 temperature 10.0 10 > th dose independent rect. 23 15
401 349.31 atmosphere 995.0 10 > th dose independent rect. 23 15
414 349.70 precipitation 0.1 10 < th dose independent rect. 2 8
415 349.70 precipitation 0.1 10 < th dose dependent rect. 2 8
418 349.76 precipitation 0.1 10 < th dose independent rect. 10 16
419 349.76 precipitation 0.1 10 < th dose dependent rect. 10 16
448 350.10 temperature 30.0 270 < th dose dependent rect. 21 1
467 350.36 precipitation 0.1 30 < th dose independent rect. 23 15
468 350.36 precipitation 0.1 30 < th dose dependent rect. 23 15
469 350.41 temperature 30.0 270 < th dose dependent rect. 8 17
496 350.84 wind 9.0 10 < th dose independent rect. 10 4
500 350.88 humidity 90.0 30 < th dose independent rect. 14 9
536 351.44 wind 1.0 270 > th dose independent rect. 20 16
542 351.73 wind 9.0 10 < th dose independent rect. 14 20
554 351.82 wind 9.0 270 < th dose dependent rect. 1 7
564 351.94 radiation 1.0 270 < th dose dependent sin 15 NA
569 352.04 wind 9.0 10 < th dose independent rect. 23 15
587 352.31 temperature 10.0 1440 > th dose independent rect. 15 9
590 352.31 temperature 10.0 1440 > th dose independent rect. 24 15
601 352.53 precipitation 0.1 10 < th dose independent rect. 14 20
602 352.53 precipitation 0.1 10 < th dose dependent rect. 14 20
617 352.66 humidity 90.0 10 < th dose independent rect. 10 4
620 352.79 wind 9.0 30 < th dose independent rect. 14 9
671 353.48 radiation 1.0 270 < th dose dependent rect. 8 18
685 353.74 wind 1.0 10 > th dose independent rect. 10 4
744 354.59 temperature 10.0 1440 > th dose independent rect. 11 4
748 354.59 temperature 10.0 1440 > th dose independent rect. 15 20
759 354.79 temperature 15.0 270 > th dose independent rect. 2 16
763 354.82 wind 1.0 270 > th dose independent rect. 8 17
784 355.06 humidity 50.0 270 > th dose independent rect. 8 17
798 355.34 atmosphere 995.0 270 > th dose independent rect. 18 8
799 355.35 wind 9.0 270 < th dose dependent rect. 8 5
830 355.72 temperature 10.0 10 > th dose dependent rect. 10 4
832 355.76 temperature 30.0 10 < th dose independent rect. 2 8
838 355.82 temperature 30.0 270 < th dose dependent rect. 1 6
840 355.84 temperature 10.0 270 > th dose dependent rect. 8 4
858 356.06 wind 9.0 270 < th dose independent rect. 18 8
860 356.06 humidity 60.0 270 > th dose independent rect. 18 8
861 356.07 temperature 10.0 270 > th dose independent rect. 18 8
863 356.07 radiation 20.0 270 < th dose independent rect. 18 8
867 356.07 atmosphere 1015.0 270 < th dose independent rect. 2 16
882 356.24 radiation 1.0 270 < th dose independent sin 14 NA
900 356.47 precipitation 0.1 10 < th dose independent rect. 14 7
901 356.47 precipitation 0.1 10 < th dose dependent rect. 14 7
918 356.73 radiation 1.0 270 < th dose independent rect. 8 18
919 356.73 atmosphere 995.0 10 > th dose independent rect. 14 20
930 356.90 temperature 30.0 270 < th dose independent rect. 18 8
965 357.33 wind 9.0 270 < th dose independent rect. 2 16