Os05g0219800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Clone ZZD1128 mRNA sequence.
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Os05g0219800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Clone ZZD1128 mRNA sequence.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 267.6 | 0.769 | 3.74 | 0.488 | 1.05 | -1.03 | 0.317 | -1.95 | -0.075 | 17 | 70.01 | 247 | -- | -- |
| 271.9 | 0.768 | 3.73 | 0.405 | 1.13 | -1.29 | 0.403 | -- | 0.0292 | 16.6 | 67 | 226 | -- | -- |
| 267.79 | 0.762 | 3.74 | 0.497 | 1.05 | -1.03 | -- | -2.1 | -0.0718 | 17 | 70.01 | 246 | -- | -- |
| 273.02 | 0.77 | 3.73 | 0.374 | 1.2 | -1.28 | -- | -- | 0.0164 | 16.9 | 66.88 | 220 | -- | -- |
| 293.17 | 0.797 | 3.75 | 0.428 | -- | -1.72 | -- | -2.15 | -0.127 | -- | 73 | 303 | -- | -- |
| 311.78 | 0.828 | 3.76 | 0.488 | 1.81 | -- | 1.64 | -- | -0.0555 | 16.6 | -- | -- | -- | -- |
| 318.95 | 0.836 | 3.75 | 0.498 | 1.82 | -- | -- | -- | -0.0469 | 16.6 | -- | -- | -- | -- |
| 306.32 | 0.815 | 3.76 | 0.275 | -- | -1.84 | -- | -- | -0.174 | -- | 71 | 320 | -- | -- |
| 276.59 | 0.775 | 3.74 | -- | 1.17 | -1.32 | -- | -- | -0.0237 | 16.9 | 66.9 | 225 | -- | -- |
| 496.27 | 1.04 | 3.74 | 0.428 | -- | -- | -- | -- | -0.0948 | -- | -- | -- | -- | -- |
| 325.49 | 0.844 | 3.77 | -- | 1.82 | -- | -- | -- | -0.102 | 16.6 | -- | -- | -- | -- |
| 307.78 | 0.817 | 3.77 | -- | -- | -1.9 | -- | -- | -0.211 | -- | 70.54 | 319 | -- | -- |
| 501.1 | 1.04 | 3.75 | -- | -- | -- | -- | -- | -0.142 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 260.85 | humidity | 60 | 270 | > th | dose dependent | rect. | 6 | 14 |
| 5 | 262.24 | humidity | 60 | 270 | > th | dose dependent | sin | 23 | NA |
| 7 | 262.96 | humidity | 60 | 90 | > th | dose dependent | sin | 21 | NA |
| 10 | 263.05 | humidity | 60 | 90 | > th | dose dependent | rect. | 7 | 16 |
| 13 | 263.54 | humidity | 70 | 270 | < th | dose independent | rect. | 9 | 9 |
| 20 | 263.86 | humidity | 90 | 270 | < th | dose dependent | rect. | 9 | 8 |
| 21 | 263.90 | humidity | 70 | 270 | > th | dose independent | rect. | 6 | 14 |
| 30 | 264.64 | humidity | 70 | 90 | > th | dose independent | rect. | 7 | 16 |
| 37 | 264.81 | humidity | 70 | 90 | < th | dose independent | rect. | 11 | 23 |
| 38 | 264.83 | humidity | 90 | 90 | < th | dose dependent | sin | 21 | NA |
| 41 | 264.93 | humidity | 70 | 270 | > th | dose independent | sin | 23 | NA |
| 47 | 265.22 | humidity | 90 | 270 | < th | dose dependent | sin | 0 | NA |
| 62 | 265.54 | humidity | 70 | 270 | < th | dose independent | sin | 23 | NA |
| 78 | 266.08 | humidity | 50 | 10 | > th | dose dependent | sin | 20 | NA |
| 91 | 266.34 | humidity | 70 | 90 | < th | dose independent | sin | 21 | NA |
| 93 | 266.38 | humidity | 80 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 94 | 266.41 | humidity | 90 | 270 | < th | dose dependent | rect. | 4 | 13 |
| 115 | 266.91 | humidity | 90 | 90 | < th | dose dependent | rect. | 11 | 8 |
| 117 | 266.96 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 15 |
| 137 | 267.18 | humidity | 60 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 158 | 267.35 | humidity | 70 | 270 | > th | dose independent | rect. | 16 | 23 |
| 217 | 267.90 | humidity | 70 | 270 | > th | dose independent | no | NA | NA |
| 223 | 267.95 | humidity | 70 | 270 | > th | dose independent | rect. | 4 | 23 |
| 261 | 268.10 | humidity | 70 | 270 | > th | dose independent | rect. | 24 | 23 |
| 264 | 268.12 | humidity | 70 | 270 | > th | dose independent | rect. | 21 | 23 |
| 289 | 268.22 | humidity | 90 | 10 | < th | dose dependent | sin | 19 | NA |
| 309 | 268.39 | humidity | 80 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 339 | 268.54 | humidity | 80 | 90 | < th | dose dependent | rect. | 8 | 23 |
| 359 | 268.61 | humidity | 70 | 270 | < th | dose independent | no | NA | NA |
| 421 | 268.68 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 9 |
| 566 | 268.90 | humidity | 80 | 90 | < th | dose dependent | no | NA | NA |
| 569 | 268.91 | humidity | 90 | 90 | < th | dose dependent | rect. | 11 | 10 |
| 570 | 268.92 | humidity | 70 | 270 | < th | dose independent | rect. | 16 | 23 |
| 622 | 269.48 | humidity | 70 | 90 | > th | dose independent | rect. | 18 | 23 |
| 635 | 269.56 | humidity | 70 | 270 | > th | dose independent | rect. | 11 | 23 |
| 715 | 270.16 | temperature | 25 | 90 | > th | dose dependent | sin | 20 | NA |
| 765 | 270.61 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 9 |
| 814 | 270.97 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 11 |
| 847 | 271.13 | humidity | 50 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 899 | 271.48 | humidity | 70 | 90 | > th | dose independent | rect. | 7 | 20 |
| 919 | 271.61 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 20 |
| 922 | 271.63 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 18 |
| 928 | 271.66 | humidity | 70 | 270 | < th | dose independent | rect. | 13 | 23 |
| 932 | 271.66 | humidity | 80 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 970 | 271.83 | temperature | 25 | 270 | > th | dose dependent | sin | 0 | NA |