FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0217900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.46 (0.0312) R2 : 0.123
β1 : -0.916 (0.114) R2dD : 0.128 R2D : 0.116
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.112 (0.0667) R2dN8 : 0.00732 R2N8 : -0.00458
σ : 0.587
deviance : 157.6
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
143.14 0.562 3.48 -1.04 0.313 -0.451 -0.394 2.33 -0.129 10.8 1.1 12 -- --
145.8 0.567 3.46 -0.926 0.322 -0.457 -0.277 -- -0.122 10.5 0.8449 8 -- --
142.45 0.56 3.48 -1.07 0.32 -0.42 -- 2.21 -0.122 11.1 1.103 13 -- --
146.05 0.567 3.46 -0.937 0.324 -0.474 -- -- -0.122 10.9 0.8886 8 -- --
148.77 0.571 3.49 -1.07 -- -0.374 -- 2.19 -0.126 -- 1.148 16 -- --
150.86 0.576 3.46 -0.896 0.313 -- -0.536 -- -0.114 9.1 -- -- -- --
151.69 0.577 3.46 -0.913 0.315 -- -- -- -0.113 9.79 -- -- -- --
152.52 0.578 3.47 -0.941 -- -0.433 -- -- -0.123 -- 0.8886 8 -- --
169.13 0.609 3.43 -- 0.329 -0.424 -- -- -0.0169 11 0.8886 8 -- --
157.6 0.587 3.46 -0.916 -- -- -- -- -0.112 -- -- -- -- --
173.65 0.616 3.43 -- 0.318 -- -- -- -0.0111 10 -- -- -- --
175.81 0.62 3.44 -- -- -0.38 -- -- -0.0177 -- 0.9 8 -- --
179.73 0.626 3.44 -- -- -- -- -- -0.0108 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 127.19 temperature 20.0 30 > th dose dependent rect. 2 1
2 127.29 wind 3.0 30 < th dose dependent rect. 2 1
3 127.47 wind 1.0 30 < th dose independent rect. 2 1
4 127.49 temperature 20.0 30 > th dose independent rect. 2 1
7 127.68 atmosphere 1005.0 30 > th dose dependent rect. 2 1
11 127.75 humidity 80.0 30 > th dose independent rect. 2 1
13 127.78 humidity 80.0 30 > th dose dependent rect. 2 1
17 127.95 atmosphere 1005.0 30 > th dose independent rect. 2 1
25 128.18 temperature 10.0 30 > th dose independent rect. 2 1
27 128.18 temperature 30.0 30 < th dose independent rect. 2 1
28 128.18 humidity 50.0 30 > th dose independent rect. 2 1
31 128.18 atmosphere 995.0 30 > th dose independent rect. 2 1
32 128.18 atmosphere 1010.0 30 < th dose independent rect. 2 1
34 128.18 radiation 1.0 30 < th dose independent rect. 2 1
39 128.18 precipitation 0.1 30 < th dose independent rect. 2 1
40 128.18 temperature 10.0 30 > th dose independent rect. 3 23
41 128.18 radiation 1.0 30 < th dose dependent rect. 2 1
46 128.18 precipitation 0.1 30 < th dose dependent rect. 2 1
51 128.82 atmosphere 1015.0 30 < th dose dependent rect. 2 1
57 129.81 temperature 30.0 30 < th dose dependent rect. 2 1
68 130.96 wind 1.0 30 > th dose independent rect. 2 1
76 131.71 radiation 1.0 14400 < th dose dependent rect. 3 1
111 132.51 wind 9.0 1440 < th dose independent rect. 3 1
112 132.51 temperature 10.0 1440 > th dose independent rect. 3 1
115 132.51 temperature 30.0 1440 < th dose independent rect. 3 1
119 132.51 humidity 50.0 1440 > th dose independent rect. 3 1
128 132.51 atmosphere 995.0 1440 > th dose independent rect. 3 1
129 132.51 radiation 1.0 1440 < th dose independent rect. 3 1
149 132.51 temperature 10.0 1440 > th dose independent rect. 4 23
162 133.41 atmosphere 995.0 30 > th dose independent rect. 3 23
165 134.28 wind 9.0 30 < th dose independent rect. 3 23
170 136.03 precipitation 0.1 30 < th dose independent rect. 3 23
171 136.03 precipitation 0.1 30 < th dose dependent rect. 3 23
209 141.39 humidity 50.0 30 > th dose independent rect. 3 23
220 142.01 wind 1.0 10 > th dose independent rect. 23 10
222 142.02 wind 1.0 10 > th dose independent rect. 19 14
248 142.27 wind 1.0 10 < th dose independent rect. 22 5
259 142.51 wind 1.0 10 > th dose independent sin 11 NA
263 142.59 wind 1.0 10 < th dose independent rect. 11 16
269 142.66 wind 1.0 10 > th dose independent rect. 23 22
275 142.85 atmosphere 1015.0 30 < th dose independent rect. 3 23
276 142.91 wind 1.0 30 > th dose independent rect. 3 23
278 142.98 temperature 25.0 30 > th dose independent rect. 23 10
279 143.02 wind 1.0 10 > th dose independent rect. 17 16
282 143.12 wind 1.0 10 < th dose independent rect. 6 21
286 143.24 atmosphere 1005.0 90 < th dose independent rect. 8 5
288 143.31 wind 1.0 10 < th dose independent rect. 2 7
295 143.42 atmosphere 1005.0 10 < th dose dependent rect. 8 4
296 143.45 wind 1.0 10 > th dose independent rect. 12 21
298 143.48 temperature 30.0 30 < th dose independent rect. 3 23
304 143.53 atmosphere 1005.0 10 < th dose dependent rect. 5 8
321 143.73 temperature 25.0 30 > th dose independent rect. 19 14
322 143.73 wind 1.0 10 > th dose independent rect. 19 23
327 143.74 humidity 90.0 4320 < th dose dependent rect. 3 1
328 143.74 atmosphere 1000.0 1440 < th dose dependent rect. 7 1
332 143.77 atmosphere 1000.0 1440 < th dose dependent rect. 5 3
354 143.90 wind 1.0 10 > th dose independent rect. 10 23
369 144.00 wind 1.0 10 > th dose independent no NA NA
382 144.08 temperature 25.0 30 > th dose independent sin 7 NA
389 144.13 temperature 25.0 30 < th dose independent rect. 21 15
410 144.26 atmosphere 1005.0 90 < th dose independent rect. 5 8
421 144.30 atmosphere 1005.0 270 < th dose dependent rect. 7 2
426 144.32 wind 1.0 10 < th dose independent rect. 2 16
431 144.33 wind 1.0 10 < th dose independent rect. 2 12
432 144.33 wind 1.0 10 < th dose independent rect. 2 14
449 144.42 wind 1.0 10 < th dose independent rect. 2 10
530 144.64 atmosphere 1000.0 1440 > th dose independent rect. 6 1
551 144.68 temperature 25.0 10 > th dose dependent rect. 19 14
565 144.72 temperature 25.0 10 > th dose dependent rect. 23 10
571 144.75 temperature 25.0 30 < th dose independent rect. 2 10
572 144.76 atmosphere 1000.0 1440 < th dose independent rect. 5 3
582 144.79 atmosphere 1000.0 1440 < th dose independent rect. 6 1
587 144.79 wind 3.0 10 < th dose dependent rect. 2 4
592 144.80 atmosphere 1000.0 1440 > th dose independent rect. 3 5
631 144.88 atmosphere 1000.0 1440 < th dose dependent sin 8 NA
636 144.89 temperature 25.0 10 < th dose independent rect. 21 13
643 144.90 atmosphere 1005.0 30 < th dose independent rect. 5 16
645 144.90 wind 1.0 10 > th dose independent rect. 17 23
673 144.95 temperature 25.0 30 < th dose independent sin 8 NA
689 144.97 radiation 20.0 10 < th dose independent rect. 19 14
758 145.06 radiation 20.0 10 < th dose independent rect. 3 23
801 145.12 atmosphere 1005.0 30 < th dose independent sin 1 NA
859 145.19 wind 1.0 10 > th dose independent sin 3 NA
866 145.19 atmosphere 1005.0 30 < th dose independent rect. 9 12
902 145.24 atmosphere 1000.0 1440 > th dose independent rect. 20 16
934 145.29 atmosphere 1000.0 1440 < th dose independent rect. 20 16
957 145.33 wind 1.0 30 < th dose dependent rect. 21 6