FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0215500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.58 (0.0331) R2 : 0.604
β1 : -2.9 (0.121) R2dD : 0.515 R2D : 0.372
β2 : 0.56 (0.085) R2dC : 0.0378 R2C : 0.00564
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.898 (0.0708) R2dN8 : 0.187 R2N8 : 0.045
σ : 0.624
deviance : 177.28
__
_____
C
peak time of C : 16.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
159.04 0.593 4.65 -3.4 0.462 -0.712 -0.123 1.97 -1.12 16.9 24.85 120 -- --
164.09 0.597 4.62 -3.12 0.454 -0.891 -0.687 -- -1.06 17 24.6 59 -- --
159.06 0.587 4.65 -3.42 0.459 -0.703 -- 2.05 -1.13 16.8 24.92 130 -- --
165.19 0.599 4.62 -3.12 0.456 -0.918 -- -- -1.06 17.2 24.6 59 -- --
164.29 0.597 4.67 -3.61 -- -1.23 -- 2.84 -1.21 -- 32.65 180 -- --
175.77 0.622 4.58 -2.89 0.563 -- -0.74 -- -0.894 16.2 -- -- -- --
177.28 0.624 4.58 -2.9 0.56 -- -- -- -0.898 16.3 -- -- -- --
170.69 0.608 4.62 -3.18 -- -1.12 -- -- -1.11 -- 30.3 150 -- --
398.01 0.934 4.5 -- 0.652 0.289 -- -- -0.53 16 24.6 59 -- --
194.17 0.651 4.58 -2.92 -- -- -- -- -0.913 -- -- -- -- --
399.36 0.935 4.51 -- 0.616 -- -- -- -0.575 16.2 -- -- -- --
251.61 0.739 4.36 -- -- 2.09 -- -- 0.0357 -- 52.51 47520 -- --
419.85 0.956 4.5 -- -- -- -- -- -0.589 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 142.05 temperature 20.0 90 > th dose dependent rect. 1 2
5 144.89 atmosphere 1000.0 10 > th dose independent rect. 3 23
10 147.20 temperature 20.0 10 > th dose independent rect. 2 1
12 147.47 wind 1.0 10 < th dose dependent rect. 2 1
19 147.96 wind 3.0 10 < th dose independent rect. 2 1
20 148.00 temperature 20.0 90 > th dose independent rect. 1 2
22 148.06 humidity 80.0 10 > th dose independent rect. 2 1
23 148.13 atmosphere 1010.0 30 < th dose dependent rect. 2 1
30 148.38 humidity 50.0 10 > th dose dependent rect. 2 1
31 148.39 wind 9.0 10 < th dose independent rect. 2 1
32 148.39 temperature 10.0 10 > th dose independent rect. 2 1
34 148.39 temperature 30.0 10 < th dose independent rect. 2 1
35 148.39 humidity 50.0 10 > th dose independent rect. 2 1
38 148.39 atmosphere 995.0 10 > th dose independent rect. 2 1
39 148.39 atmosphere 1010.0 10 < th dose independent rect. 2 1
41 148.39 radiation 1.0 10 < th dose independent rect. 2 1
46 148.39 precipitation 0.1 10 < th dose independent rect. 2 1
47 148.39 temperature 10.0 10 > th dose independent rect. 3 23
49 148.39 radiation 1.0 10 < th dose dependent rect. 2 1
54 148.39 precipitation 0.1 10 < th dose dependent rect. 2 1
66 148.61 atmosphere 995.0 10 > th dose dependent rect. 2 1
105 148.77 precipitation 0.1 30 < th dose independent rect. 3 23
107 148.77 precipitation 0.1 30 < th dose dependent rect. 3 23
116 149.03 temperature 30.0 30 < th dose dependent rect. 2 1
117 149.04 wind 1.0 30 > th dose independent rect. 2 1
124 149.23 wind 9.0 1440 < th dose independent rect. 3 1
125 149.23 temperature 10.0 1440 > th dose independent rect. 3 1
128 149.23 temperature 30.0 1440 < th dose independent rect. 3 1
132 149.23 humidity 50.0 1440 > th dose independent rect. 3 1
141 149.23 atmosphere 995.0 1440 > th dose independent rect. 3 1
142 149.23 radiation 1.0 1440 < th dose independent rect. 3 1
162 149.23 temperature 10.0 1440 > th dose independent rect. 4 23
165 149.23 radiation 1.0 1440 < th dose dependent rect. 3 1
189 150.02 temperature 20.0 270 > th dose dependent rect. 23 4
191 150.31 temperature 10.0 270 > th dose dependent rect. 6 21
206 151.97 wind 1.0 10 < th dose independent rect. 22 5
208 152.17 wind 1.0 10 < th dose independent rect. 17 10
216 152.48 temperature 10.0 90 > th dose dependent rect. 8 19
220 152.63 temperature 30.0 30 < th dose dependent rect. 3 23
238 153.42 temperature 30.0 270 < th dose dependent rect. 15 15
240 153.52 temperature 10.0 10 > th dose dependent rect. 6 23
241 153.64 temperature 10.0 720 > th dose dependent rect. 15 3
264 154.18 temperature 30.0 270 < th dose dependent rect. 11 19
275 154.27 temperature 15.0 10 > th dose dependent rect. 8 20
277 154.29 wind 9.0 14400 > th dose dependent rect. 18 3
281 154.34 wind 5.0 14400 > th dose dependent rect. 18 3
296 154.46 temperature 10.0 270 > th dose dependent sin 10 NA
299 154.53 humidity 80.0 43200 < th dose independent rect. 17 2
302 154.55 temperature 10.0 720 > th dose dependent rect. 15 12
305 154.57 temperature 30.0 270 < th dose dependent sin 10 NA
307 154.58 radiation 1.0 43200 < th dose dependent rect. 1 3
309 154.60 temperature 10.0 270 > th dose dependent rect. 22 12
326 154.90 wind 1.0 10 > th dose independent sin 17 NA
329 154.95 humidity 50.0 43200 > th dose independent rect. 14 1
331 154.95 temperature 20.0 90 > th dose independent rect. 8 19
334 154.98 wind 9.0 14400 < th dose independent rect. 18 3
337 155.05 humidity 80.0 43200 > th dose independent rect. 17 2
342 155.10 wind 9.0 14400 > th dose independent rect. 18 3
363 155.31 wind 9.0 30 < th dose independent rect. 3 23
364 155.33 wind 1.0 30 < th dose dependent rect. 22 5
367 155.41 wind 1.0 30 < th dose dependent rect. 15 12
372 155.47 humidity 50.0 30 > th dose independent rect. 3 23
373 155.47 temperature 10.0 270 > th dose dependent rect. 17 10
378 155.51 wind 1.0 30 < th dose dependent rect. 17 10
390 155.57 temperature 15.0 270 > th dose independent rect. 5 22
393 155.59 humidity 80.0 43200 < th dose independent rect. 16 4
396 155.61 humidity 50.0 43200 < th dose independent rect. 14 1
416 155.84 humidity 90.0 14400 > th dose independent rect. 21 1
426 155.95 wind 9.0 14400 > th dose dependent rect. 18 7
443 156.07 temperature 20.0 10 > th dose independent rect. 8 20
454 156.18 humidity 50.0 43200 > th dose independent rect. 6 9
472 156.29 humidity 60.0 43200 > th dose independent rect. 8 2
481 156.30 humidity 50.0 43200 < th dose independent rect. 6 9
490 156.33 humidity 60.0 43200 < th dose independent rect. 9 1
534 156.46 humidity 80.0 43200 > th dose dependent rect. 19 1
560 156.54 humidity 70.0 43200 < th dose dependent rect. 8 1
609 156.72 humidity 50.0 43200 > th dose independent sin 2 NA
650 156.82 humidity 50.0 43200 < th dose independent sin 2 NA
653 156.83 wind 9.0 14400 < th dose dependent rect. 20 1
668 156.88 humidity 90.0 14400 < th dose independent rect. 20 1
753 157.03 humidity 90.0 14400 > th dose dependent rect. 21 1
786 157.10 wind 1.0 30 < th dose dependent rect. 10 17
850 157.21 humidity 90.0 14400 < th dose independent rect. 19 3
954 157.29 atmosphere 1015.0 43200 < th dose independent rect. 5 1
979 157.29 humidity 50.0 43200 < th dose independent rect. 11 21
982 157.29 radiation 1.0 43200 < th dose dependent rect. 20 8