Os05g0215000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : BURP domain containing protein.
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Os05g0215000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : BURP domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 348.41 | 0.877 | 8.34 | -2.94 | 1.95 | 1.9 | 2.38 | 0.992 | -0.454 | 5.95 | 91.85 | 766 | 18.8 | 5.03 |
| 349.78 | 0.871 | 8.33 | -3 | 1.94 | 1.89 | 2.78 | -- | -0.459 | 5.89 | 92.44 | 778 | 18.8 | 5.07 |
| 354.1 | 0.876 | 8.32 | -2.83 | 1.51 | 2.36 | -- | 2.11 | -0.407 | 6.87 | 99.21 | 819 | 18.7 | 4.58 |
| 363.18 | 0.888 | 8.33 | -2.95 | 1.55 | 2.25 | -- | -- | -0.435 | 7.07 | 100 | 797 | 18.5 | 4.73 |
| 380.16 | 0.908 | 8.4 | -2.9 | -- | 3.3 | -- | 2.35 | -0.486 | -- | 109.8 | 875 | 18.7 | 5.08 |
| 426.06 | 0.968 | 8.32 | -3.15 | 3 | -- | 2.58 | -- | -0.456 | 5.06 | -- | -- | -- | -- |
| 442.94 | 0.986 | 8.33 | -3.15 | 3.02 | -- | -- | -- | -0.468 | 5.02 | -- | -- | -- | -- |
| 386.07 | 0.915 | 8.38 | -2.97 | -- | 3.97 | -- | -- | -0.516 | -- | 110.2 | 849 | 18.2 | 7.6 |
| 594.56 | 1.14 | 8.28 | -- | 1.15 | 2.73 | -- | -- | -0.18 | 7.81 | 98.82 | 848 | 18.5 | 4.64 |
| 920.82 | 1.42 | 8.37 | -3.04 | -- | -- | -- | -- | -0.391 | -- | -- | -- | -- | -- |
| 704.31 | 1.24 | 8.25 | -- | 2.96 | -- | -- | -- | -0.118 | 5.06 | -- | -- | -- | -- |
| 608.54 | 1.15 | 8.33 | -- | -- | 4.09 | -- | -- | -0.186 | -- | 105 | 854 | 18.5 | 7.17 |
| 1164.6 | 1.59 | 8.29 | -- | -- | -- | -- | -- | -0.054 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 351.81 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 5 |
| 3 | 352.35 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 20 | 362.43 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 12 |
| 23 | 362.80 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 8 |
| 29 | 363.97 | humidity | 80 | 720 | < th | dose independent | rect. | 19 | 3 |
| 38 | 364.67 | humidity | 70 | 720 | > th | dose dependent | rect. | 15 | 11 |
| 53 | 365.91 | humidity | 80 | 720 | > th | dose independent | rect. | 14 | 12 |
| 61 | 366.27 | humidity | 80 | 90 | > th | dose dependent | rect. | 23 | 4 |
| 114 | 369.46 | humidity | 70 | 720 | > th | dose dependent | sin | 15 | NA |
| 121 | 369.84 | humidity | 80 | 720 | > th | dose independent | rect. | 18 | 8 |
| 141 | 370.77 | humidity | 80 | 720 | > th | dose independent | sin | 15 | NA |
| 145 | 370.88 | humidity | 90 | 720 | > th | dose independent | rect. | 22 | 2 |
| 171 | 371.62 | humidity | 90 | 30 | > th | dose independent | rect. | 22 | 6 |
| 201 | 372.44 | humidity | 80 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 301 | 375.80 | humidity | 80 | 720 | < th | dose independent | sin | 15 | NA |
| 303 | 375.85 | humidity | 90 | 720 | < th | dose independent | rect. | 10 | 14 |
| 306 | 376.07 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 13 |
| 347 | 376.85 | radiation | 10 | 1440 | > th | dose independent | sin | 16 | NA |
| 355 | 376.98 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 6 |
| 357 | 377.00 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 8 |
| 364 | 377.10 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 16 |
| 433 | 377.73 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 469 | 378.04 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 5 |
| 489 | 378.11 | humidity | 90 | 30 | > th | dose independent | rect. | 20 | 8 |
| 498 | 378.26 | humidity | 90 | 720 | < th | dose dependent | sin | 13 | NA |
| 503 | 378.33 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 535 | 378.58 | humidity | 90 | 30 | > th | dose independent | rect. | 18 | 10 |
| 575 | 378.78 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 597 | 379.06 | humidity | 90 | 30 | > th | dose independent | rect. | 8 | 20 |
| 601 | 379.11 | radiation | 10 | 1440 | < th | dose dependent | sin | 17 | NA |
| 619 | 379.31 | radiation | 30 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 629 | 379.39 | humidity | 90 | 30 | > th | dose independent | rect. | 6 | 22 |
| 641 | 379.50 | humidity | 90 | 30 | > th | dose independent | rect. | 15 | 13 |
| 690 | 379.73 | humidity | 90 | 30 | > th | dose independent | rect. | 11 | 17 |
| 702 | 379.80 | radiation | 10 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 764 | 380.50 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 23 | 2 |
| 873 | 381.17 | wind | 3 | 90 | < th | dose dependent | rect. | 23 | 4 |
| 886 | 381.26 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 22 | 4 |