Os05g0214800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os05g0214800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 141.33 | 0.559 | 8.4 | 1.5 | 0.605 | 1.75 | 0.916 | -0.558 | -0.0341 | 8.44 | 22.3 | 1949 | -- | -- |
| 142.12 | 0.555 | 8.42 | 1.37 | 0.628 | 1.76 | 0.865 | -- | -0.053 | 8.43 | 22.2 | 1928 | -- | -- |
| 143.84 | 0.559 | 8.4 | 1.5 | 0.603 | 1.75 | -- | -0.463 | -0.039 | 8.72 | 22.3 | 1928 | -- | -- |
| 144.35 | 0.56 | 8.42 | 1.36 | 0.627 | 1.76 | -- | -- | -0.0786 | 8.7 | 22.2 | 1928 | -- | -- |
| 163 | 0.595 | 8.41 | 1.56 | -- | 1.81 | -- | -0.517 | -0.00257 | -- | 22.23 | 2102 | -- | -- |
| 255.59 | 0.749 | 8.56 | 0.618 | 0.69 | -- | 0.837 | -- | -0.692 | 8.64 | -- | -- | -- | -- |
| 257.79 | 0.752 | 8.56 | 0.646 | 0.685 | -- | -- | -- | -0.69 | 8.86 | -- | -- | -- | -- |
| 163.63 | 0.596 | 8.42 | 1.4 | -- | 1.82 | -- | -- | -0.039 | -- | 22.21 | 2098 | -- | -- |
| 182.33 | 0.629 | 8.47 | -- | 0.683 | 1.43 | -- | -- | -0.324 | 8.22 | 22.36 | 1383 | -- | -- |
| 284.57 | 0.788 | 8.57 | 0.646 | -- | -- | -- | -- | -0.686 | -- | -- | -- | -- | -- |
| 268.79 | 0.767 | 8.57 | -- | 0.687 | -- | -- | -- | -0.762 | 8.79 | -- | -- | -- | -- |
| 193.73 | 0.648 | 8.49 | -- | -- | 1.42 | -- | -- | -0.315 | -- | 22.3 | 788 | -- | -- |
| 295.59 | 0.802 | 8.59 | -- | -- | -- | -- | -- | -0.757 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 142.98 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 5 | 143.34 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 6 | 143.41 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 8 | 143.44 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 40 | 144.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 14 |
| 46 | 144.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 9 |
| 109 | 145.17 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 178 | 146.25 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 19 |
| 316 | 148.00 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 439 | 149.25 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 446 | 149.31 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 511 | 149.96 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 572 | 150.48 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 672 | 151.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 711 | 151.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 728 | 151.79 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 832 | 152.85 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |