Os05g0214100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y- 1140 of Kluyveromyces lactis.
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Os05g0214100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y- 1140 of Kluyveromyces lactis.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.26 | 0.326 | 8.35 | -0.783 | 0.873 | -1.91 | 0.976 | 0.594 | -0.297 | 5.35 | 27.46 | 202 | -- | -- |
| 48.63 | 0.325 | 8.34 | -0.676 | 0.868 | -1.94 | 1.13 | -- | -0.273 | 5.23 | 27.4 | 187 | -- | -- |
| 50.21 | 0.33 | 8.36 | -0.853 | 0.87 | -1.89 | -- | 1.08 | -0.31 | 5.1 | 27.6 | 167 | -- | -- |
| 51.8 | 0.335 | 8.34 | -0.673 | 0.872 | -1.95 | -- | -- | -0.275 | 5.07 | 27.31 | 166 | -- | -- |
| 67.95 | 0.384 | 8.37 | -0.884 | -- | -1.73 | -- | 0.807 | -0.287 | -- | 27.87 | 1404 | -- | -- |
| 102.55 | 0.475 | 8.24 | -0.192 | 0.446 | -- | 1.01 | -- | 0.149 | 6.78 | -- | -- | -- | -- |
| 105.13 | 0.48 | 8.25 | -0.174 | 0.449 | -- | -- | -- | 0.147 | 7.02 | -- | -- | -- | -- |
| 68.52 | 0.386 | 8.35 | -0.723 | -- | -1.79 | -- | -- | -0.251 | -- | 27.37 | 1410 | -- | -- |
| 62.62 | 0.369 | 8.31 | -- | 0.818 | -1.68 | -- | -- | -0.183 | 5.12 | 27.4 | 168 | -- | -- |
| 115.74 | 0.503 | 8.26 | -0.165 | -- | -- | -- | -- | 0.155 | -- | -- | -- | -- | -- |
| 105.93 | 0.481 | 8.24 | -- | 0.447 | -- | -- | -- | 0.167 | 7.04 | -- | -- | -- | -- |
| 80.24 | 0.417 | 8.31 | -- | -- | -1.44 | -- | -- | -0.105 | -- | 27.5 | 1396 | -- | -- |
| 116.46 | 0.504 | 8.25 | -- | -- | -- | -- | -- | 0.174 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 11 | 51.59 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 13 | 51.66 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 15 | 51.75 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 16 | 51.76 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 25 | 52.02 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 27 | 52.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 33 | 52.27 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 49 | 53.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 52 | 53.85 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 61 | 54.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 73 | 54.39 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 90 | 54.94 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 114 | 55.87 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 120 | 55.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 7 |
| 134 | 56.13 | temperature | 30 | 1440 | < th | dose dependent | sin | 3 | NA |
| 152 | 56.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 20 |
| 153 | 56.24 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 167 | 56.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 19 |
| 192 | 56.34 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 22 |
| 239 | 56.42 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 18 |
| 250 | 56.44 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 293 | 56.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 7 |
| 440 | 56.81 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 542 | 56.99 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 16 |
| 560 | 57.01 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 577 | 57.03 | temperature | 10 | 1440 | > th | dose dependent | sin | 4 | NA |
| 852 | 57.38 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 861 | 57.39 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 23 |
| 869 | 57.41 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 876 | 57.41 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 23 |