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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0213900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Virulence factor, pectin lyase fold family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.17 (0.0158) R2 : 0.000296
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0122 (0.0333) R2dN8 : 0.000382 R2N8 : 0.000296
σ : 0.298
deviance : 40.66
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
37.28 0.287 3.18 0.146 0.124 0.247 -0.196 0.989 -0.0197 5.29 91 5900 -- --
38.6 0.289 3.18 0.096 0.126 0.298 -0.248 -- -0.0395 4.92 93 4529 -- --
37.34 0.285 3.18 0.149 0.127 0.246 -- 1.01 -0.0189 5.9 91 5913 -- --
38.67 0.29 3.18 0.0847 0.165 0.293 -- -- -0.0499 5.91 97 4856 -- --
38.15 0.288 3.18 0.149 -- 0.249 -- 0.997 -0.0167 -- 91 5836 -- --
39.65 0.295 3.17 0.0602 0.123 -- -0.217 -- 0.0153 5.19 -- -- -- --
39.74 0.295 3.17 0.0607 0.125 -- -- -- 0.0165 5.86 -- -- -- --
39.5 0.293 3.18 0.0972 -- 0.279 -- -- -0.0375 -- 97.24 7020 -- --
38.82 0.29 3.18 -- 0.161 0.281 -- -- -0.0579 6 142.5 4855 -- --
40.55 0.298 3.17 0.0645 -- -- -- -- 0.0194 -- -- -- -- --
39.84 0.295 3.17 -- 0.126 -- -- -- 0.00971 5.83 -- -- -- --
39.67 0.293 3.18 -- -- 0.27 -- -- -0.0494 -- 113.4 5590 -- --
40.66 0.298 3.17 -- -- -- -- -- 0.0122 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.25 atmosphere 995.0 720 > th dose independent rect. 23 16
2 36.29 atmosphere 1005.0 10 > th dose dependent rect. 2 2
3 36.30 atmosphere 1000.0 30 > th dose independent rect. 3 23
8 36.59 precipitation 0.1 720 < th dose independent rect. 15 8
9 36.59 precipitation 0.1 720 < th dose dependent rect. 15 8
10 36.61 atmosphere 1000.0 720 > th dose independent rect. 3 8
13 36.72 precipitation 0.1 720 < th dose independent rect. 11 16
14 36.72 precipitation 0.1 720 < th dose dependent rect. 11 16
15 36.80 temperature 10.0 720 > th dose independent rect. 15 8
16 36.80 temperature 10.0 720 > th dose independent rect. 23 16
18 36.87 temperature 10.0 720 > th dose independent rect. 3 8
20 36.87 temperature 10.0 720 > th dose independent rect. 11 16
22 36.89 humidity 80.0 14400 < th dose dependent rect. 3 6
24 36.93 humidity 50.0 720 > th dose independent rect. 3 8
28 37.02 temperature 25.0 90 > th dose independent rect. 1 1
29 37.02 radiation 40.0 720 < th dose independent rect. 15 8
30 37.03 wind 9.0 720 < th dose independent rect. 3 8
35 37.06 atmosphere 1010.0 30 < th dose dependent rect. 2 1
36 37.08 humidity 80.0 14400 < th dose dependent rect. 21 13
44 37.13 wind 1.0 30 < th dose dependent rect. 2 1
46 37.14 humidity 70.0 14400 > th dose independent rect. 7 3
47 37.14 humidity 70.0 14400 > th dose independent rect. 4 6
48 37.14 humidity 70.0 14400 > th dose independent rect. 24 10
55 37.15 atmosphere 995.0 720 > th dose independent rect. 15 8
58 37.16 wind 1.0 10 < th dose independent rect. 2 1
59 37.16 atmosphere 1005.0 90 > th dose independent rect. 2 1
64 37.16 temperature 25.0 90 > th dose dependent rect. 1 2
66 37.17 humidity 70.0 14400 < th dose independent rect. 8 2
93 37.19 temperature 15.0 30 > th dose dependent rect. 2 1
97 37.19 radiation 1.0 43200 < th dose dependent rect. 3 1
103 37.20 temperature 10.0 30 > th dose independent rect. 2 1
105 37.20 temperature 25.0 30 < th dose independent rect. 2 1
107 37.20 humidity 50.0 30 > th dose independent rect. 2 1
112 37.20 atmosphere 995.0 30 > th dose independent rect. 2 1
113 37.20 atmosphere 1010.0 30 < th dose independent rect. 2 1
115 37.20 radiation 1.0 30 < th dose independent rect. 2 1
120 37.20 precipitation 0.1 30 < th dose independent rect. 2 1
121 37.20 temperature 10.0 30 > th dose independent rect. 3 23
123 37.20 temperature 30.0 30 < th dose dependent rect. 2 1
124 37.20 humidity 50.0 30 > th dose dependent rect. 2 1
128 37.20 radiation 1.0 30 < th dose dependent rect. 2 1
133 37.20 precipitation 0.1 30 < th dose dependent rect. 2 1
165 37.23 wind 1.0 30 > th dose independent rect. 2 1
168 37.23 wind 9.0 720 < th dose independent rect. 15 8
199 37.33 humidity 90.0 90 < th dose independent rect. 2 1
201 37.33 precipitation 0.1 30 < th dose independent rect. 3 23
204 37.33 precipitation 0.1 30 < th dose dependent rect. 3 23
205 37.34 humidity 90.0 90 < th dose independent rect. 2 3
206 37.34 wind 9.0 30 < th dose independent rect. 3 23
207 37.34 wind 1.0 30 < th dose dependent rect. 23 1
226 37.38 wind 9.0 1440 < th dose independent rect. 3 1
227 37.38 temperature 10.0 1440 > th dose independent rect. 3 1
230 37.38 temperature 30.0 1440 < th dose independent rect. 3 1
234 37.38 humidity 50.0 1440 > th dose independent rect. 3 1
243 37.38 atmosphere 995.0 1440 > th dose independent rect. 3 1
244 37.38 radiation 1.0 1440 < th dose independent rect. 3 1
264 37.38 temperature 10.0 1440 > th dose independent rect. 4 23
278 37.39 humidity 70.0 4320 > th dose dependent rect. 3 9
295 37.44 humidity 60.0 14400 < th dose independent rect. 11 1
302 37.46 humidity 70.0 4320 > th dose independent rect. 10 1
330 37.48 humidity 50.0 4320 > th dose dependent rect. 23 16
336 37.49 humidity 70.0 4320 > th dose independent rect. 8 7
339 37.49 atmosphere 1015.0 720 < th dose independent rect. 3 8
354 37.50 humidity 70.0 4320 > th dose independent rect. 8 9
356 37.50 humidity 50.0 14400 > th dose dependent rect. 8 1
426 37.52 humidity 50.0 4320 > th dose dependent sin 4 NA
440 37.52 humidity 90.0 4320 < th dose dependent rect. 23 17
441 37.53 humidity 70.0 4320 > th dose independent sin 3 NA
455 37.53 humidity 70.0 4320 < th dose independent rect. 8 9
457 37.53 humidity 50.0 4320 > th dose dependent rect. 11 2
497 37.54 atmosphere 1000.0 720 > th dose independent rect. 21 14
506 37.54 humidity 80.0 14400 < th dose dependent sin 8 NA
512 37.54 humidity 90.0 4320 < th dose dependent rect. 3 13
518 37.55 humidity 70.0 4320 < th dose independent rect. 10 3
544 37.55 temperature 20.0 30 > th dose dependent rect. 20 7
577 37.56 wind 1.0 14400 < th dose dependent rect. 6 1
579 37.56 humidity 80.0 4320 > th dose dependent rect. 7 2
715 37.58 humidity 90.0 4320 < th dose dependent sin 4 NA
745 37.59 humidity 70.0 4320 < th dose independent sin 2 NA
766 37.59 humidity 80.0 4320 < th dose dependent rect. 11 2
829 37.60 humidity 90.0 4320 < th dose dependent rect. 10 5
858 37.61 wind 1.0 14400 < th dose independent rect. 4 3
930 37.63 humidity 50.0 30 > th dose independent rect. 3 23
983 37.64 humidity 70.0 4320 > th dose independent rect. 16 23