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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0212300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Endo-beta-1,4-glucanase precursor (EC 3.2.1.4).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.35 (0.0343) R2 : 0.579
β1 : 3.01 (0.129) R2dD : 0.561 R2D : 0.316
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.44 (0.167) R2dE : 0.224 R2E : -0.00548
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.666 (0.0757) R2dN8 : 0.104 R2N8 : -0.0648
σ : 0.635
deviance : 185.98
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 14.09
memory length : 168
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
180.25 0.631 4.31 3.36 0.169 -2.59 -1.36 2.2 0.783 17.4 13.67 203 -- --
182.69 0.63 4.35 3.04 0.229 -2.57 -0.753 -- 0.694 18.7 13.19 211 -- --
181.7 0.628 4.33 3.26 0.416 -2.46 -- 1.36 0.749 21.6 14.83 353 -- --
183.01 0.63 4.36 3.03 0.421 -2.48 -- -- 0.689 21.4 14.7 335 -- --
184.97 0.633 4.33 3.17 -- -2.47 -- 1.14 0.712 -- 13.63 160 -- --
246.78 0.736 4.42 2.52 0.632 -- 1.01 -- 0.335 3.37 -- -- -- --
249.85 0.74 4.43 2.5 0.634 -- -- -- 0.33 3.02 -- -- -- --
185.98 0.635 4.35 3.01 -- -2.44 -- -- 0.666 -- 14.09 168 -- --
396.3 0.927 4.48 -- 0.349 -1.11 -- -- 0.133 23.3 24.87 284 -- --
272.85 0.772 4.43 2.53 -- -- -- -- 0.346 -- -- -- -- --
414.48 0.952 4.49 -- 0.683 -- -- -- 0.0513 3.04 -- -- -- --
399.28 0.931 4.48 -- -- -1.27 -- -- 0.121 -- 25.13 134 -- --
441.2 0.98 4.49 -- -- -- -- -- 0.0658 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 164.41 wind 9.0 43200 > th dose independent rect. 20 1
2 164.55 wind 9.0 43200 < th dose independent rect. 20 1
3 167.21 wind 7.0 43200 > th dose dependent rect. 20 1
4 168.22 wind 9.0 43200 > th dose dependent rect. 20 3
14 171.14 wind 9.0 43200 > th dose dependent rect. 17 13
16 171.38 wind 9.0 43200 > th dose dependent rect. 17 4
17 171.43 wind 9.0 43200 > th dose dependent rect. 20 9
24 172.22 wind 9.0 43200 > th dose dependent rect. 17 6
40 173.57 radiation 1.0 43200 < th dose dependent rect. 21 6
52 174.47 radiation 1.0 43200 < th dose dependent rect. 22 2
57 174.91 precipitation 0.1 43200 > th dose dependent rect. 20 1
58 174.98 temperature 15.0 270 > th dose dependent rect. 22 23
61 175.11 temperature 10.0 270 > th dose dependent rect. 20 23
67 175.50 wind 9.0 43200 > th dose independent rect. 19 9
82 176.43 temperature 10.0 720 > th dose dependent rect. 22 20
93 176.92 temperature 15.0 720 > th dose dependent rect. 22 18
101 177.21 wind 9.0 43200 < th dose independent rect. 20 10
105 177.36 temperature 10.0 720 > th dose dependent rect. 1 17
119 177.83 wind 9.0 43200 > th dose independent rect. 17 4
124 177.93 radiation 1.0 43200 < th dose dependent rect. 1 3
125 177.96 wind 9.0 43200 > th dose independent rect. 17 13
155 178.42 temperature 10.0 270 > th dose dependent sin 23 NA
156 178.42 humidity 50.0 14400 < th dose dependent rect. 16 18
158 178.46 temperature 10.0 720 > th dose dependent sin 3 NA
161 178.51 humidity 50.0 14400 < th dose dependent rect. 16 1
184 178.88 wind 9.0 43200 > th dose independent rect. 17 7
233 179.62 atmosphere 995.0 43200 < th dose independent rect. 14 1
237 179.72 atmosphere 995.0 43200 < th dose dependent rect. 15 1
256 180.01 atmosphere 1000.0 43200 < th dose dependent rect. 4 1
265 180.23 humidity 50.0 14400 > th dose independent rect. 17 16
267 180.24 atmosphere 1000.0 43200 < th dose dependent rect. 11 1
283 180.54 temperature 30.0 720 < th dose dependent rect. 24 21
289 180.63 humidity 50.0 14400 > th dose independent rect. 16 18
292 180.64 precipitation 0.1 43200 < th dose independent rect. 17 1
293 180.64 precipitation 0.1 43200 < th dose dependent rect. 17 1
301 180.73 precipitation 0.1 43200 > th dose independent rect. 17 1
314 180.97 humidity 50.0 14400 < th dose independent rect. 17 17
318 181.00 precipitation 0.1 43200 > th dose dependent rect. 17 1
336 181.21 temperature 15.0 270 > th dose dependent no NA NA
350 181.37 atmosphere 1000.0 43200 > th dose independent rect. 11 1
351 181.37 atmosphere 1000.0 43200 < th dose independent rect. 11 1
352 181.38 radiation 30.0 4320 < th dose independent rect. 15 17
389 181.77 temperature 10.0 1440 > th dose dependent rect. 6 9
403 181.86 humidity 50.0 14400 < th dose independent rect. 16 1
440 182.08 humidity 80.0 14400 > th dose independent rect. 17 1
447 182.11 temperature 15.0 1440 > th dose dependent rect. 8 1
455 182.16 temperature 10.0 1440 > th dose dependent rect. 6 13
458 182.18 temperature 15.0 270 > th dose dependent rect. 5 23
462 182.20 temperature 30.0 1440 < th dose dependent rect. 8 1
479 182.27 temperature 15.0 720 > th dose dependent rect. 17 20
484 182.29 temperature 15.0 1440 > th dose dependent rect. 6 20
539 182.48 humidity 60.0 14400 < th dose independent rect. 18 1
572 182.56 temperature 30.0 720 < th dose dependent sin 3 NA
580 182.57 wind 1.0 43200 < th dose dependent rect. 20 1
627 182.65 humidity 60.0 14400 > th dose independent rect. 18 1
659 182.70 atmosphere 995.0 43200 > th dose independent rect. 12 4
688 182.76 precipitation 0.1 43200 > th dose independent rect. 20 1
689 182.76 precipitation 0.1 43200 > th dose dependent rect. 17 4
745 182.90 precipitation 0.1 43200 < th dose independent rect. 20 1
746 182.90 precipitation 0.1 43200 < th dose dependent rect. 20 1
762 182.95 humidity 80.0 14400 < th dose independent rect. 17 2
799 183.02 atmosphere 995.0 43200 > th dose independent rect. 14 1
809 183.03 temperature 10.0 4320 > th dose dependent rect. 13 1
819 183.05 temperature 10.0 720 > th dose dependent rect. 12 23
847 183.11 humidity 50.0 14400 > th dose independent rect. 16 1
883 183.18 radiation 10.0 14400 < th dose independent rect. 17 1
890 183.19 humidity 50.0 14400 > th dose independent rect. 16 8
894 183.20 humidity 50.0 14400 > th dose independent rect. 16 5
895 183.20 temperature 10.0 1440 > th dose dependent no NA NA
896 183.20 temperature 10.0 4320 > th dose dependent rect. 13 5
947 183.31 humidity 50.0 14400 > th dose independent rect. 16 10
948 183.31 temperature 10.0 4320 > th dose dependent rect. 13 3
975 183.38 humidity 50.0 14400 > th dose independent rect. 16 13