Os05g0212200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0212200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.8 | 0.193 | 11.1 | 0.0926 | 0.768 | -0.484 | 0.0383 | 0.195 | 0.213 | 23.4 | 79 | 1363 | -- | -- |
| 16.83 | 0.191 | 11.1 | 0.0771 | 0.772 | -0.471 | 0.0407 | -- | 0.209 | 23.4 | 78.8 | 1353 | -- | -- |
| 16.8 | 0.191 | 11.1 | 0.0922 | 0.767 | -0.484 | -- | 0.2 | 0.213 | 23.4 | 79 | 1364 | -- | -- |
| 16.83 | 0.191 | 11.1 | 0.0752 | 0.772 | -0.47 | -- | -- | 0.209 | 23.4 | 78.76 | 1353 | -- | -- |
| 38.99 | 0.292 | 11.1 | 0.104 | -- | -0.382 | -- | -0.0121 | 0.18 | -- | 78.76 | 1601 | -- | -- |
| 19.57 | 0.207 | 11.1 | 0.0525 | 0.755 | -- | 0.00968 | -- | 0.187 | 23.3 | -- | -- | -- | -- |
| 19.57 | 0.207 | 11.1 | 0.0521 | 0.755 | -- | -- | -- | 0.187 | 23.3 | -- | -- | -- | -- |
| 38.99 | 0.292 | 11.1 | 0.104 | -- | -0.382 | -- | -- | 0.18 | -- | 79 | 1601 | -- | -- |
| 16.98 | 0.192 | 11.1 | -- | 0.772 | -0.461 | -- | -- | 0.2 | 23.4 | 78.63 | 1353 | -- | -- |
| 55.23 | 0.347 | 11.1 | 0.0709 | -- | -- | -- | -- | 0.194 | -- | -- | -- | -- | -- |
| 19.64 | 0.207 | 11.2 | -- | 0.755 | -- | -- | -- | 0.181 | 23.3 | -- | -- | -- | -- |
| 39.27 | 0.293 | 11.1 | -- | -- | -0.38 | -- | -- | 0.168 | -- | 79 | 1601 | -- | -- |
| 55.36 | 0.347 | 11.1 | -- | -- | -- | -- | -- | 0.186 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.65 | humidity | 80 | 720 | > th | dose independent | rect. | 9 | 18 |
| 17 | 16.83 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 17 |
| 21 | 16.85 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 12 |
| 52 | 16.91 | humidity | 80 | 720 | > th | dose independent | sin | 19 | NA |
| 66 | 16.94 | humidity | 80 | 1440 | > th | dose independent | sin | 23 | NA |
| 67 | 16.94 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 75 | 16.95 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 18 |
| 76 | 16.95 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 21 |
| 79 | 16.96 | humidity | 80 | 1440 | < th | dose independent | sin | 23 | NA |
| 83 | 16.96 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 16 |
| 86 | 16.96 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 20 |
| 98 | 16.98 | humidity | 80 | 720 | < th | dose independent | sin | 20 | NA |
| 104 | 16.98 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 17 |
| 126 | 17.00 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 15 |
| 151 | 17.02 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 152 | 17.02 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 191 | 17.05 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 11 |
| 208 | 17.05 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 272 | 17.08 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 274 | 17.09 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 368 | 17.12 | humidity | 60 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 415 | 17.14 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 22 |
| 445 | 17.15 | humidity | 80 | 1440 | > th | dose independent | rect. | 19 | 23 |
| 446 | 17.15 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 449 | 17.16 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 480 | 17.17 | humidity | 80 | 720 | > th | dose independent | no | NA | NA |
| 514 | 17.17 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 18 |
| 587 | 17.20 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 12 |
| 627 | 17.22 | humidity | 80 | 720 | > th | dose independent | rect. | 15 | 23 |
| 631 | 17.22 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 651 | 17.23 | humidity | 70 | 720 | > th | dose dependent | sin | 19 | NA |
| 707 | 17.26 | humidity | 60 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 764 | 17.29 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 862 | 17.33 | humidity | 70 | 1440 | > th | dose dependent | sin | 22 | NA |
| 892 | 17.34 | humidity | 60 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 938 | 17.36 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 7 |
| 961 | 17.37 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 5 |
| 987 | 17.38 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 992 | 17.38 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 1000 | 17.39 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 11 |