Os05g0209500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0209500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.98 | 0.345 | 10.1 | 0.403 | 1.54 | -0.401 | 0.33 | 0.948 | 0.261 | 2.29 | 19.52 | 853 | -- | -- |
| 55.82 | 0.348 | 10.1 | 0.508 | 1.52 | -0.545 | 0.142 | -- | 0.289 | 2.35 | 19.5 | 802 | -- | -- |
| 54.32 | 0.343 | 10.1 | 0.401 | 1.55 | -0.421 | -- | 0.845 | 0.263 | 2.31 | 19.5 | 801 | -- | -- |
| 54.41 | 0.344 | 10.1 | 0.526 | 1.54 | -0.783 | -- | -- | 0.314 | 2.31 | 18.4 | 737 | -- | -- |
| 192.44 | 0.646 | 10.1 | 0.436 | -- | -0.69 | -- | 0.88 | 0.302 | -- | 19.5 | 929 | -- | -- |
| 62.23 | 0.37 | 10 | 0.733 | 1.58 | -- | 0.081 | -- | 0.386 | 2.18 | -- | -- | -- | -- |
| 62.26 | 0.369 | 10 | 0.731 | 1.58 | -- | -- | -- | 0.386 | 2.18 | -- | -- | -- | -- |
| 186.41 | 0.636 | 10.1 | 0.426 | -- | -1.32 | -- | -- | 0.171 | -- | 18.3 | 939 | -- | -- |
| 57.54 | 0.353 | 10.1 | -- | 1.59 | -0.917 | -- | -- | 0.172 | 2.23 | 18.4 | 5010 | -- | -- |
| 211.91 | 0.68 | 10 | 0.797 | -- | -- | -- | -- | 0.424 | -- | -- | -- | -- | -- |
| 76.33 | 0.409 | 10.1 | -- | 1.6 | -- | -- | -- | 0.304 | 2.19 | -- | -- | -- | -- |
| 188.29 | 0.639 | 10.1 | -- | -- | -1.65 | -- | -- | 0.201 | -- | 18.35 | 907 | -- | -- |
| 228.67 | 0.706 | 10 | -- | -- | -- | -- | -- | 0.335 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.75 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 22 | 10 |
| 3 | 49.85 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 8 | 50.03 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 21 | 50.28 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 1 | 5 |
| 22 | 50.29 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 5 |
| 25 | 50.36 | temperature | 20.0 | 720 | < th | dose independent | rect. | 2 | 7 |
| 42 | 50.61 | radiation | 10.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 46 | 50.63 | temperature | 25.0 | 720 | < th | dose dependent | sin | 8 | NA |
| 55 | 50.72 | temperature | 20.0 | 720 | < th | dose independent | rect. | 5 | 1 |
| 60 | 50.78 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 13 |
| 85 | 51.02 | temperature | 20.0 | 720 | < th | dose independent | sin | 6 | NA |
| 96 | 51.09 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 119 | 51.23 | temperature | 20.0 | 720 | < th | dose independent | rect. | 23 | 15 |
| 199 | 51.71 | temperature | 20.0 | 720 | > th | dose independent | rect. | 2 | 4 |
| 229 | 51.85 | temperature | 20.0 | 720 | > th | dose independent | sin | 5 | NA |
| 252 | 51.93 | humidity | 60.0 | 270 | > th | dose independent | rect. | 2 | 18 |
| 386 | 52.48 | radiation | 10.0 | 90 | < th | dose dependent | sin | 22 | NA |
| 400 | 52.50 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 485 | 52.79 | humidity | 60.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 528 | 52.88 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 532 | 52.89 | radiation | 10.0 | 90 | < th | dose independent | rect. | 5 | 16 |
| 534 | 52.90 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 541 | 52.92 | wind | 7.0 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 557 | 52.96 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 571 | 52.99 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 582 | 53.02 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 6 | 16 |
| 584 | 53.03 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 586 | 53.04 | radiation | 20.0 | 270 | < th | dose independent | rect. | 11 | 9 |
| 588 | 53.04 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 609 | 53.10 | wind | 7.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 624 | 53.11 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 2 | 18 |
| 636 | 53.14 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 664 | 53.19 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 12 | 8 |
| 676 | 53.22 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 18 |
| 696 | 53.26 | wind | 7.0 | 14400 | < th | dose independent | rect. | 16 | 12 |
| 720 | 53.29 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 16 | 5 |
| 724 | 53.30 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 12 | 9 |
| 730 | 53.31 | wind | 7.0 | 14400 | > th | dose independent | rect. | 16 | 12 |
| 750 | 53.33 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 16 | 12 |
| 752 | 53.33 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 18 |
| 758 | 53.34 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 772 | 53.36 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 15 |
| 775 | 53.36 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 19 |
| 783 | 53.37 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 787 | 53.37 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 16 |
| 878 | 53.47 | wind | 7.0 | 14400 | > th | dose independent | rect. | 15 | 18 |
| 905 | 53.49 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 912 | 53.50 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 937 | 53.52 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 5 |
| 939 | 53.53 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 957 | 53.55 | humidity | 60.0 | 270 | > th | dose independent | rect. | 14 | 6 |
| 988 | 53.57 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 992 | 53.58 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 16 | 2 |
| 1000 | 53.59 | wind | 7.0 | 14400 | < th | dose independent | sin | 13 | NA |