Os05g0209200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0209200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 154.33 | 0.584 | 3.59 | 0.298 | 0.0553 | -0.441 | -1.25 | -0.269 | -0.271 | 2.7 | 20.87 | 40 | -- | -- |
| 154.54 | 0.579 | 3.58 | 0.361 | 0.0571 | -0.436 | -1.09 | -- | -0.257 | 2.75 | 20.86 | 50 | -- | -- |
| 158.37 | 0.586 | 3.57 | 0.429 | 0.0597 | -0.418 | -- | 0.221 | -0.241 | 0.784 | 20.81 | 50 | -- | -- |
| 158.62 | 0.587 | 3.58 | 0.385 | 0.0615 | -0.427 | -- | -- | -0.254 | 0.939 | 20.84 | 50 | -- | -- |
| 158.59 | 0.587 | 3.57 | 0.437 | -- | -0.441 | -- | 0.215 | -0.237 | -- | 20.86 | 50 | -- | -- |
| 162.99 | 0.599 | 3.6 | 0.237 | 0.177 | -- | -1.03 | -- | -0.351 | 2.39 | -- | -- | -- | -- |
| 166.72 | 0.605 | 3.6 | 0.265 | 0.177 | -- | -- | -- | -0.345 | 1.3 | -- | -- | -- | -- |
| 158.82 | 0.587 | 3.58 | 0.388 | -- | -0.446 | -- | -- | -0.247 | -- | 20.8 | 50 | -- | -- |
| 162.35 | 0.593 | 3.59 | -- | 0.0811 | -0.369 | -- | -- | -0.306 | 1.13 | 20.8 | 44 | -- | -- |
| 168.66 | 0.607 | 3.6 | 0.272 | -- | -- | -- | -- | -0.341 | -- | -- | -- | -- | -- |
| 168.58 | 0.607 | 3.61 | -- | 0.182 | -- | -- | -- | -0.374 | 1.35 | -- | -- | -- | -- |
| 162.73 | 0.594 | 3.59 | -- | -- | -0.393 | -- | -- | -0.3 | -- | 20.86 | 44 | -- | -- |
| 170.62 | 0.61 | 3.6 | -- | -- | -- | -- | -- | -0.371 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 149.85 | wind | 5 | 1440 | > th | dose dependent | rect. | 1 | 6 |
| 2 | 149.96 | wind | 5 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 4 | 150.24 | wind | 5 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 8 | 150.57 | temperature | 20 | 30 | > th | dose independent | rect. | 3 | 23 |
| 18 | 151.50 | radiation | 10 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 28 | 152.30 | radiation | 20 | 4320 | < th | dose dependent | rect. | 12 | 1 |
| 31 | 152.47 | wind | 3 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 35 | 152.67 | radiation | 10 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 40 | 152.84 | wind | 3 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 61 | 153.41 | radiation | 1 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 74 | 153.70 | radiation | 10 | 4320 | < th | dose independent | rect. | 11 | 20 |
| 86 | 153.81 | radiation | 10 | 4320 | > th | dose independent | rect. | 11 | 7 |
| 99 | 153.83 | wind | 1 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 101 | 153.83 | temperature | 30 | 30 | < th | dose dependent | rect. | 22 | 8 |
| 102 | 153.85 | wind | 5 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 111 | 153.93 | temperature | 30 | 90 | < th | dose dependent | sin | 9 | NA |
| 119 | 153.97 | temperature | 10 | 90 | > th | dose dependent | sin | 9 | NA |
| 124 | 154.03 | radiation | 1 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 125 | 154.03 | radiation | 1 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 143 | 154.13 | radiation | 10 | 4320 | < th | dose independent | rect. | 11 | 8 |
| 156 | 154.14 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 16 |
| 193 | 154.32 | radiation | 20 | 4320 | < th | dose dependent | rect. | 14 | 1 |
| 196 | 154.33 | radiation | 1 | 4320 | < th | dose independent | rect. | 6 | 6 |
| 198 | 154.33 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 11 | 5 |
| 199 | 154.34 | temperature | 25 | 1440 | < th | dose independent | rect. | 12 | 3 |
| 200 | 154.34 | radiation | 1 | 4320 | > th | dose independent | rect. | 6 | 6 |
| 210 | 154.36 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 12 | 10 |
| 214 | 154.37 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 13 | 2 |
| 222 | 154.39 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 13 | 2 |
| 224 | 154.39 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 12 | 4 |
| 231 | 154.40 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 13 | 2 |
| 265 | 154.42 | temperature | 20 | 10 | > th | dose independent | rect. | 16 | 22 |
| 268 | 154.43 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 270 | 154.43 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 14 | 7 |
| 308 | 154.49 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 311 | 154.49 | radiation | 1 | 4320 | < th | dose dependent | rect. | 6 | 6 |
| 319 | 154.50 | radiation | 10 | 4320 | < th | dose independent | rect. | 5 | 10 |
| 342 | 154.51 | atmosphere | 1015 | 14400 | > th | dose dependent | sin | 19 | NA |
| 356 | 154.52 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 16 | 6 |
| 366 | 154.53 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 11 | 9 |
| 428 | 154.58 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 11 | 8 |
| 508 | 154.62 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 11 |
| 628 | 154.70 | temperature | 20 | 30 | < th | dose independent | rect. | 9 | 22 |
| 653 | 154.71 | temperature | 20 | 10 | < th | dose independent | rect. | 2 | 23 |
| 663 | 154.71 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 19 |
| 678 | 154.73 | wind | 3 | 4320 | < th | dose independent | rect. | 9 | 2 |
| 694 | 154.74 | wind | 3 | 4320 | > th | dose independent | rect. | 9 | 2 |
| 784 | 154.82 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 18 |
| 793 | 154.83 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 825 | 154.85 | atmosphere | 1015 | 14400 | > th | dose independent | sin | 20 | NA |
| 847 | 154.86 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 848 | 154.87 | atmosphere | 1015 | 14400 | < th | dose independent | sin | 20 | NA |
| 861 | 154.88 | temperature | 25 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 870 | 154.88 | temperature | 25 | 90 | < th | dose dependent | rect. | 22 | 13 |
| 882 | 154.89 | temperature | 20 | 30 | > th | dose independent | rect. | 23 | 23 |
| 886 | 154.89 | radiation | 1 | 1440 | < th | dose dependent | rect. | 6 | 9 |
| 891 | 154.90 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 9 |
| 971 | 154.94 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 23 | 23 |
| 972 | 154.95 | wind | 5 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 979 | 154.95 | atmosphere | 1015 | 14400 | > th | dose dependent | no | NA | NA |
| 982 | 154.95 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 16 |