Os05g0209000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0209000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 129.05 | 0.534 | 6.41 | 0.877 | 1.2 | -1.28 | 0.607 | -0.706 | -0.00174 | 5.75 | 20.57 | 1311 | -- | -- |
| 130.04 | 0.531 | 6.39 | 0.998 | 1.2 | -1.17 | 0.601 | -- | 0.0206 | 5.7 | 20.6 | 1240 | -- | -- |
| 129.93 | 0.531 | 6.41 | 0.892 | 1.2 | -1.28 | -- | -0.645 | 0.000188 | 5.67 | 20.58 | 1276 | -- | -- |
| 130.77 | 0.533 | 6.39 | 1 | 1.21 | -1.18 | -- | -- | 0.0217 | 5.64 | 20.57 | 1234 | -- | -- |
| 184.95 | 0.633 | 6.43 | 0.913 | -- | -1.22 | -- | -0.307 | 0.0321 | -- | 20.7 | 441 | -- | -- |
| 162.41 | 0.597 | 6.45 | 0.512 | 1.17 | -- | 0.843 | -- | -0.244 | 5.97 | -- | -- | -- | -- |
| 164.13 | 0.6 | 6.45 | 0.519 | 1.17 | -- | -- | -- | -0.247 | 5.9 | -- | -- | -- | -- |
| 185.07 | 0.634 | 6.41 | 0.962 | -- | -1.18 | -- | -- | 0.0493 | -- | 20.78 | 423 | -- | -- |
| 151.83 | 0.574 | 6.43 | -- | 1.16 | -0.729 | -- | -- | -0.136 | 5.49 | 21.39 | 895 | -- | -- |
| 235.37 | 0.717 | 6.47 | 0.554 | -- | -- | -- | -- | -0.22 | -- | -- | -- | -- | -- |
| 171.22 | 0.612 | 6.46 | -- | 1.18 | -- | -- | -- | -0.305 | 5.88 | -- | -- | -- | -- |
| 183.23 | 0.63 | 6.39 | -- | -- | -0.892 | -- | -- | 0.112 | -- | 25 | 262 | -- | -- |
| 243.47 | 0.728 | 6.48 | -- | -- | -- | -- | -- | -0.282 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 128.11 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 19 | 9 |
| 8 | 128.62 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 16 | 20 |
| 10 | 128.70 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 19 | 9 |
| 23 | 129.12 | temperature | 20.0 | 720 | > th | dose independent | rect. | 6 | 21 |
| 30 | 129.27 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 38 | 129.47 | temperature | 20.0 | 1440 | > th | dose independent | sin | 14 | NA |
| 88 | 129.99 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 114 | 130.16 | temperature | 20.0 | 1440 | < th | dose independent | sin | 13 | NA |
| 118 | 130.17 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 126 | 130.23 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 18 |
| 128 | 130.25 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 24 | 3 |
| 143 | 130.31 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 192 | 130.47 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |
| 258 | 130.78 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 19 | 18 |
| 371 | 131.09 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 395 | 131.17 | temperature | 20.0 | 1440 | > th | dose independent | no | NA | NA |
| 426 | 131.32 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 457 | 131.48 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 472 | 131.54 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 550 | 131.78 | temperature | 20.0 | 1440 | < th | dose independent | no | NA | NA |
| 572 | 131.89 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 638 | 132.21 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 689 | 132.42 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 7 | 20 |
| 838 | 132.99 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 839 | 132.99 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 955 | 133.39 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 989 | 133.48 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 21 | 23 |