Os05g0208000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 2-oxoglutarate/malate translocator.
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Os05g0208000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 2-oxoglutarate/malate translocator.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.99 | 0.278 | 14.2 | 0.424 | 1.07 | -0.549 | -0.176 | 0.764 | 0.146 | 5.24 | 29.4 | 379 | -- | -- |
| 35.35 | 0.277 | 14.2 | 0.374 | 1.08 | -0.474 | -0.181 | -- | 0.155 | 5.19 | 29.1 | 431 | -- | -- |
| 35.05 | 0.276 | 14.2 | 0.44 | 1.07 | -0.559 | -- | 0.938 | 0.151 | 5.24 | 29.42 | 379 | -- | -- |
| 35.32 | 0.277 | 14.2 | 0.331 | 1.08 | -0.47 | -- | -- | 0.133 | 5.23 | 29.3 | 379 | -- | -- |
| 68.02 | 0.384 | 14.2 | 0.636 | -- | -1.07 | -- | 0.48 | 0.344 | -- | 27.6 | 379 | -- | -- |
| 40.34 | 0.298 | 14.2 | 0.261 | 1.31 | -- | -0.0233 | -- | 0.107 | 5.25 | -- | -- | -- | -- |
| 40.34 | 0.297 | 14.2 | 0.261 | 1.31 | -- | -- | -- | 0.107 | 5.25 | -- | -- | -- | -- |
| 68 | 0.384 | 14.2 | 0.541 | -- | -1.05 | -- | -- | 0.322 | -- | 27.6 | 384 | -- | -- |
| 38.25 | 0.288 | 14.2 | -- | 1.11 | -0.429 | -- | -- | 0.11 | 5.21 | 29.32 | 387 | -- | -- |
| 129.62 | 0.532 | 14.3 | 0.307 | -- | -- | -- | -- | 0.14 | -- | -- | -- | -- | -- |
| 42.14 | 0.304 | 14.3 | -- | 1.31 | -- | -- | -- | 0.0779 | 5.24 | -- | -- | -- | -- |
| 74.34 | 0.402 | 14.2 | -- | -- | -1.09 | -- | -- | 0.221 | -- | 28.21 | 400 | -- | -- |
| 132.1 | 0.536 | 14.3 | -- | -- | -- | -- | -- | 0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.47 | temperature | 15 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 4 | 33.61 | temperature | 20 | 30 | > th | dose independent | rect. | 20 | 7 |
| 7 | 33.82 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 9 |
| 8 | 33.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 6 |
| 10 | 33.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 18 | 33.99 | temperature | 25 | 10 | > th | dose independent | rect. | 14 | 6 |
| 24 | 34.07 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 1 |
| 27 | 34.08 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 3 |
| 33 | 34.10 | temperature | 10 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 34 | 34.15 | radiation | 20 | 270 | > th | dose independent | rect. | 15 | 2 |
| 50 | 34.16 | radiation | 30 | 270 | < th | dose dependent | sin | 14 | NA |
| 51 | 34.16 | temperature | 15 | 30 | > th | dose dependent | rect. | 6 | 14 |
| 58 | 34.18 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 7 |
| 75 | 34.25 | temperature | 25 | 90 | > th | dose independent | rect. | 15 | 4 |
| 84 | 34.27 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 7 |
| 90 | 34.27 | radiation | 10 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 98 | 34.31 | radiation | 10 | 270 | > th | dose dependent | rect. | 15 | 2 |
| 196 | 34.48 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 1 |
| 204 | 34.50 | radiation | 10 | 270 | < th | dose independent | sin | 14 | NA |
| 221 | 34.53 | temperature | 25 | 10 | > th | dose independent | rect. | 12 | 8 |
| 236 | 34.55 | radiation | 1 | 270 | > th | dose dependent | sin | 14 | NA |
| 256 | 34.60 | temperature | 20 | 30 | > th | dose independent | rect. | 20 | 18 |
| 309 | 34.69 | radiation | 20 | 270 | > th | dose independent | sin | 14 | NA |
| 339 | 34.79 | wind | 7 | 30 | < th | dose independent | rect. | 23 | 21 |
| 340 | 34.79 | temperature | 25 | 270 | > th | dose dependent | sin | 20 | NA |
| 429 | 34.94 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 19 | 8 |
| 431 | 34.94 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 22 |
| 453 | 34.96 | temperature | 25 | 270 | > th | dose dependent | rect. | 11 | 17 |
| 461 | 34.97 | temperature | 25 | 270 | > th | dose dependent | rect. | 11 | 15 |
| 465 | 34.98 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 20 | 7 |
| 471 | 34.98 | temperature | 25 | 270 | > th | dose dependent | rect. | 11 | 13 |
| 481 | 34.99 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 501 | 35.01 | temperature | 20 | 30 | > th | dose independent | rect. | 20 | 16 |
| 525 | 35.05 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 14 |
| 556 | 35.09 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 15 |
| 568 | 35.10 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 19 |
| 687 | 35.23 | humidity | 60 | 720 | > th | dose independent | rect. | 15 | 6 |
| 765 | 35.32 | humidity | 60 | 720 | > th | dose independent | rect. | 15 | 15 |
| 772 | 35.33 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 788 | 35.36 | temperature | 25 | 30 | > th | dose dependent | sin | 15 | NA |
| 799 | 35.37 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 19 |
| 923 | 35.48 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 20 | 3 |
| 924 | 35.48 | radiation | 30 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 935 | 35.49 | temperature | 10 | 720 | > th | dose dependent | sin | 2 | NA |
| 952 | 35.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 9 |
| 955 | 35.51 | humidity | 70 | 270 | < th | dose independent | rect. | 14 | 5 |
| 958 | 35.51 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 20 | 3 |
| 980 | 35.54 | wind | 7 | 270 | < th | dose independent | rect. | 21 | 22 |
| 985 | 35.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 11 |