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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0207700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.14 (0.03) R2 : 0.494
β1 : -1.63 (0.11) R2dD : 0.254 R2D : 0.249
β2 : 1.13 (0.0762) R2dC : 0.244 R2C : 0.244
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0395 (0.064) R2dN8 : 0.000567 R2N8 : -0.00492
σ : 0.564
deviance : 145.11
__
_____
C
peak time of C : 20.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
135.9 0.548 4.15 -1.56 1.12 0.112 0.615 -2.11 -0.0157 20 9.962 1389 -- --
142.59 0.56 4.14 -1.6 1.21 -0.149 0.768 -- -0.03 20.5 9.962 1389 -- --
135.55 0.542 4.16 -1.56 1.16 0.129 -- -2.05 -0.0136 20 9.833 1162 -- --
144.47 0.563 4.14 -1.62 1.21 -0.139 -- -- -0.0303 20.5 9.965 1907 -- --
187.64 0.638 4.05 -0.775 -- -0.615 -- -1.82 0.0789 -- 4.57 893 -- --
143.33 0.561 4.14 -1.61 1.12 -- 0.768 -- -0.0405 20.1 -- -- -- --
145.11 0.564 4.14 -1.63 1.13 -- -- -- -0.0395 20.1 -- -- -- --
148.45 0.567 4.1 -1.82 -- -1.56 -- -- -0.13 -- 0.62 976 -- --
211.17 0.677 4.13 -- 1.19 -0.535 -- -- 0.0745 20.1 9.71 3035 -- --
214.54 0.684 4.11 -1.64 -- -- -- -- -0.0534 -- -- -- -- --
215.13 0.686 4.1 -- 1.14 -- -- -- 0.142 20 -- -- -- --
227.7 0.703 4.08 -- -- -1.49 -- -- 0.0632 -- 2.213 909 -- --
285.5 0.789 4.07 -- -- -- -- -- 0.129 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 130.81 humidity 90.0 10 < th dose independent rect. 2 7
3 131.71 humidity 90.0 10 < th dose independent rect. 13 20
14 133.54 humidity 90.0 90 < th dose independent rect. 13 19
17 133.66 radiation 10.0 1440 < th dose independent rect. 13 2
20 133.73 wind 7.0 14400 < th dose independent rect. 9 2
24 133.89 wind 7.0 14400 > th dose independent rect. 9 1
28 133.99 radiation 1.0 720 > th dose dependent rect. 18 11
37 134.09 wind 7.0 14400 > th dose dependent rect. 9 1
39 134.11 radiation 20.0 1440 < th dose dependent rect. 12 2
42 134.15 radiation 10.0 1440 < th dose independent rect. 10 5
47 134.18 wind 5.0 14400 > th dose dependent rect. 9 3
63 134.33 radiation 20.0 1440 < th dose dependent rect. 10 5
89 134.46 radiation 10.0 1440 < th dose independent rect. 10 19
96 134.49 radiation 10.0 1440 < th dose independent rect. 12 17
98 134.50 radiation 10.0 1440 < th dose independent rect. 10 12
121 134.54 radiation 10.0 1440 < th dose independent rect. 12 11
123 134.54 radiation 10.0 1440 < th dose independent rect. 12 14
127 134.55 radiation 10.0 1440 < th dose independent rect. 12 8
164 134.75 wind 9.0 1440 > th dose independent rect. 18 2
189 134.84 radiation 10.0 1440 < th dose independent sin 19 NA
192 134.85 temperature 25.0 90 < th dose independent rect. 13 9
232 135.07 wind 9.0 720 > th dose independent rect. 18 8
261 135.12 radiation 20.0 1440 < th dose dependent rect. 18 5
264 135.13 radiation 30.0 1440 < th dose dependent rect. 18 3
265 135.14 radiation 10.0 720 < th dose independent rect. 4 15
268 135.15 wind 9.0 1440 > th dose dependent rect. 18 1
269 135.16 wind 9.0 720 > th dose independent rect. 18 5
280 135.18 precipitation 0.1 720 > th dose dependent rect. 13 1
301 135.22 radiation 10.0 4320 > th dose dependent rect. 17 1
324 135.25 humidity 80.0 720 < th dose independent rect. 12 10
327 135.25 wind 9.0 720 > th dose dependent rect. 18 8
338 135.27 precipitation 0.1 720 > th dose independent rect. 13 1
365 135.33 wind 9.0 720 > th dose dependent rect. 18 5
427 135.50 radiation 10.0 720 < th dose independent rect. 23 20
436 135.52 humidity 90.0 10 < th dose independent rect. 21 12
497 135.63 wind 5.0 43200 < th dose dependent rect. 9 1
509 135.65 radiation 1.0 720 > th dose independent rect. 9 20
525 135.66 radiation 1.0 720 > th dose independent rect. 18 11
527 135.66 wind 5.0 43200 < th dose dependent rect. 9 3
529 135.66 temperature 10.0 10 > th dose dependent rect. 9 16
531 135.67 radiation 1.0 720 > th dose independent rect. 9 10
545 135.68 radiation 30.0 14400 < th dose independent rect. 16 5
546 135.68 radiation 30.0 14400 < th dose independent rect. 16 7
584 135.73 radiation 10.0 4320 < th dose independent rect. 17 7
588 135.74 radiation 10.0 4320 < th dose independent rect. 17 1
594 135.75 wind 7.0 14400 < th dose independent sin 5 NA
595 135.75 radiation 10.0 4320 < th dose independent rect. 17 4
609 135.77 humidity 80.0 720 < th dose independent sin 18 NA
614 135.77 radiation 10.0 4320 < th dose independent rect. 17 10
650 135.82 radiation 10.0 1440 > th dose independent rect. 12 2
657 135.82 radiation 1.0 270 < th dose dependent rect. 17 1
676 135.85 humidity 90.0 10 < th dose dependent sin 12 NA
682 135.87 wind 7.0 14400 > th dose independent sin 5 NA
693 135.88 humidity 90.0 720 < th dose independent rect. 10 9
702 135.89 atmosphere 1005.0 14400 > th dose dependent rect. 4 1
714 135.91 radiation 30.0 14400 < th dose independent rect. 16 1
717 135.91 temperature 25.0 90 > th dose independent rect. 1 7
718 135.91 wind 5.0 43200 < th dose dependent rect. 11 1
722 135.92 radiation 1.0 270 < th dose dependent rect. 8 10
728 135.93 humidity 60.0 43200 < th dose dependent rect. 24 9
731 135.94 atmosphere 1005.0 14400 > th dose dependent rect. 6 1
753 135.97 humidity 90.0 10 < th dose independent sin 12 NA
778 135.99 radiation 1.0 270 < th dose independent rect. 17 1
802 136.00 humidity 90.0 90 < th dose dependent sin 12 NA
818 136.02 wind 1.0 4320 > th dose independent rect. 23 1
838 136.03 humidity 90.0 720 < th dose independent rect. 13 2
852 136.04 radiation 30.0 14400 < th dose independent rect. 16 14
868 136.05 humidity 80.0 720 > th dose dependent rect. 13 3
880 136.07 atmosphere 1010.0 4320 < th dose independent rect. 3 3
894 136.08 atmosphere 1010.0 4320 > th dose independent rect. 3 2
922 136.10 atmosphere 1010.0 4320 > th dose independent rect. 5 1
932 136.10 precipitation 0.1 270 > th dose dependent rect. 2 2
941 136.11 precipitation 0.1 270 > th dose independent rect. 2 2
946 136.11 temperature 25.0 90 > th dose independent rect. 9 16
947 136.11 wind 7.0 14400 > th dose dependent sin 5 NA
951 136.12 atmosphere 1010.0 14400 < th dose independent rect. 7 1
974 136.12 radiation 10.0 4320 > th dose dependent rect. 16 15
989 136.13 humidity 80.0 720 > th dose dependent rect. 13 5
998 136.14 atmosphere 1005.0 14400 > th dose dependent rect. 13 1